Factsheet for TraesCS3D01G223900.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G031180.1	Barley	extracellular	26.31	100.0
TraesCS3B01G258600.2	Wheat	extracellular	97.76	97.58
TraesCS3A01G225800.2	Wheat	extracellular	97.95	97.4
HORVU3Hr1G056270.10	Barley	extracellular	94.59	95.3
Os01t0637500-00	Rice	cytosol, extracellular	55.78	88.46
Os01t0636500-01	Rice	extracellular	84.89	84.57
EES01142	Sorghum	extracellular	81.9	82.52
Zm00001d011444_P002	Maize	extracellular	83.02	82.26
Zm00001d044110_P001	Maize	extracellular	81.16	80.26
TraesCS1D01G425600.1	Wheat	extracellular	69.22	70.4
GSMUA_Achr6P22080_001	Banana	extracellular	61.19	67.63
GSMUA_Achr5P09080_001	Banana	extracellular	60.45	66.53
GSMUA_Achr4P02960_001	Banana	extracellular	57.84	65.26
GSMUA_Achr1P27280_001	Banana	extracellular	59.33	62.35
VIT_01s0127g00400.t01	Wine grape	extracellular, mitochondrion, plastid	58.96	61.0
KRG99364	Soybean	extracellular, nucleus	60.45	60.22
KRH45648	Soybean	nucleus	60.07	59.85
Bra031724.1-P	Field mustard	extracellular	56.34	58.64
CDX69569	Canola	extracellular	47.95	58.54
CDY09873	Canola	extracellular	47.57	58.09
Bra008748.1-P	Field mustard	extracellular	47.57	58.09
AT5G14650.1	Thale cress	extracellular	47.01	57.93
PGSC0003DMT400035162	Potato	extracellular	55.22	57.93
CDY37962	Canola	extracellular, golgi, vacuole	57.46	57.89
Solyc05g005170.2.1	Tomato	nucleus	54.85	57.87
CDX93397	Canola	extracellular, golgi, vacuole	57.09	57.41
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	57.09	57.41
CDY54228	Canola	extracellular, golgi, vacuole	56.53	57.39
KRG93260	Soybean	extracellular	47.39	57.34
KRH56581	Soybean	extracellular	46.83	57.18
CDY50367	Canola	extracellular, golgi	57.09	57.09
AT1G60590.1	Thale cress	extracellular	57.46	57.04
VIT_14s0066g01060.t01	Wine grape	extracellular	51.31	56.94
CDY47212	Canola	extracellular	56.9	56.9
Bra027148.1-P	Field mustard	extracellular	56.72	56.72
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	56.16	56.69
CDY20962	Canola	extracellular, golgi, vacuole	55.97	56.5
AT1G10640.1	Thale cress	extracellular, golgi	55.78	56.2
CDY20612	Canola	extracellular	55.6	56.12
CDY34877	Canola	extracellular, golgi	50.93	55.83
Solyc07g015870.2.1	Tomato	extracellular	44.96	53.67
PGSC0003DMT400077010	Potato	cytosol	45.15	52.27
TraesCS7D01G326800.1	Wheat	extracellular	37.13	40.78
TraesCS5D01G470100.1	Wheat	extracellular	31.16	40.73
TraesCS1D01G311000.1	Wheat	extracellular	36.01	40.29
TraesCS5D01G470200.1	Wheat	extracellular	30.22	38.66
TraesCS1D01G129600.2	Wheat	cytosol, extracellular, nucleus	23.32	38.58
TraesCS2D01G402100.1	Wheat	extracellular	28.92	38.27
TraesCS7D01G164200.1	Wheat	extracellular	29.66	37.86
TraesCS2D01G402200.1	Wheat	extracellular	27.24	37.34
TraesCS1D01G370300.3	Wheat	extracellular	28.36	36.98
TraesCS2D01G402300.1	Wheat	extracellular	22.76	36.64
TraesCS4D01G243600.1	Wheat	extracellular	29.48	36.49
TraesCS2D01G402000.1	Wheat	extracellular	29.1	36.45
TraesCS1D01G066400.1	Wheat	cytosol	25.37	35.7
TraesCS3D01G130300.1	Wheat	extracellular	26.31	35.16
TraesCS3D01G130400.1	Wheat	extracellular	25.56	33.25
TraesCS3D01G021700.1	Wheat	extracellular	26.68	32.43
TraesCS1D01G370800.1	Wheat	extracellular	26.12	32.26
TraesCS1D01G370700.1	Wheat	extracellular	25.0	31.98
TraesCS1D01G066300.1	Wheat	extracellular, golgi	29.29	31.46

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31375	PANTHER:PTHR31375:SF56	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G223900	EnsemblPlants:TraesCS3D01G223900.1	SEG:seg

Description

No Description!

Coordinates

chr3D:-:305452677..305456655

Molecular Weight (calculated)

57077.0 Da

IEP (calculated)

8.722

GRAVY (calculated)

-0.307

Length

536 amino acids

Sequence
(BLAST)

001: MKLRVKGFGL LLLLVLLALC STIDVCDARR GKHWRPRSSP SSSLLKKKGK AKKGSSHRQH GGNRRSPPPG PPGVGKGHQT PYQPSPNVPV SPSPSPKPSP
101: AKGNGHSSPQ PPSPSCGKGR QPPPQPPPAA SASPGAVFNV VDFGAKGDGV SDDTKAFQAA WAAACKLGAS TVLVPAELEF LVGPISFSGP YCKPNIXXXL
201: EGTILAPTNA KAWGSGLLQW LEFTKLSGLS IQGSGTINGR GQQWWTYSDP NDDEDDDKYN EELERMPRVK PTALRFYGSS NVVVAGIKIV NSSQCHLKFD
301: NCQGVLVHDL TISSPENSLN TDGIHLQNSK DVSIHHTNLA CGDDCISIQT GCSNIYIHNV NCGPGHGISI GGLGRDNTKA CVSNVTVRDV NMFRTMTGVR
401: IKTWQGGIGL VQDIRFSNIQ VSEVQTPIMI DQFYCDKRTC TNQTSAVAVS GVQYENIRGT FTIKPLHFAC SDSSPCSGIT LTGVQLKPVQ IAHYHLNNPF
501: CWQAFGELFT PTIPPIACLQ IGKPAGNNLQ SYHDIC

Best Arabidopsis Sequence Match ( AT1G60590.1 )
(BLAST)

001: MITRESLTLR SITMMTLVTI LVWSATLETC IARRGRHWRH HHRSSSSLSD SLSSKKPKSH ENNHHHMSHK SKPKPKMKTQ PPKSNDGSPV VSQPPQVQQP
101: PPPHVQPPPT PLPLQPVEDS QQFNVLDFGA KGDGMSDDTQ AFEAAWASAC KVEASTMIIP PDYIFLVGPI SFSGPYCQAN IVFQLEGMIV APTDTESWGG
201: GLMWWIEFTK LSGITIQGNG VIDGRGTVWW QQDYLSDYPI DDDFKLIVPL NNSVQERPPM PIRSELNWRM PSIKPTALRF YGSIDVTVTG ITIQNSPQCH
301: LKFDNCVKVL VHDVNVSSPG DSPNTDGIHL QNTRDVMIHT TTLACGDDCI SIQTGCSNVY VHNVNCGPGH GISIGSLGKD STKACVSNIT VRDVVMHNTM
401: TGVRIKTWQG GIGSVKGILF SNIQLTEVQL PIVIDQFYCD HSKCMNHTSA VSVEGVTYEK IRGTYTVKPV HFACSDSFPC IDVQLSGIEL KPVQLQYHMY
501: DPFCWKTFGE LNSATVPPID CLQIGKPARN GVHSDHDICL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:O22699]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.