Factsheet for TraesCS1D01G129600.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G142700.1	Wheat	plastid	94.44	69.55
TraesCS7D01G164200.1	Wheat	extracellular	89.2	68.81
TraesCS1A01G124300.1	Wheat	extracellular, plastid	91.36	68.36
TraesCS5D01G470200.1	Wheat	extracellular	65.43	50.6
TraesCS5D01G470100.1	Wheat	extracellular	63.58	50.24
TraesCS1D01G066400.1	Wheat	cytosol	49.07	41.73
TraesCS1D01G066300.1	Wheat	extracellular, golgi	57.1	37.07
TraesCS1D01G370300.3	Wheat	extracellular	43.21	34.06
TraesCS4D01G243600.1	Wheat	extracellular	45.06	33.72
TraesCS2D01G402100.1	Wheat	extracellular	40.12	32.1
TraesCS3D01G130300.1	Wheat	extracellular	39.2	31.67
TraesCS2D01G402200.1	Wheat	extracellular	37.65	31.2
TraesCS3D01G130400.1	Wheat	extracellular	38.58	30.34
TraesCS2D01G402000.1	Wheat	extracellular	39.51	29.91
TraesCS1D01G370700.1	Wheat	extracellular	36.73	28.4
TraesCS2D01G402300.1	Wheat	extracellular	29.01	28.23
TraesCS1D01G311000.1	Wheat	extracellular	40.12	27.14
TraesCS7D01G326800.1	Wheat	extracellular	39.81	26.43
TraesCS1D01G370800.1	Wheat	extracellular	33.33	24.88
TraesCS3D01G021700.1	Wheat	extracellular	33.33	24.49
TraesCS1D01G425600.1	Wheat	extracellular	38.27	23.53
TraesCS3D01G223900.1	Wheat	extracellular	38.58	23.32

Protein Annotations

EnsemblPlants:TraesCS1D01G129600.2	EnsemblPlantsGene:TraesCS1D01G129600	Gene3D:2.160.20.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	PANTHER:PTHR31375	PANTHER:PTHR31375:SF39	PFAM:PF00295	ScanProsite:PS00502
SUPFAM:SSF51126	MapMan:21.3.5.1.1	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:143256910..143260073

Molecular Weight (calculated)

35667.0 Da

IEP (calculated)

9.418

GRAVY (calculated)

-0.320

Length

324 amino acids

Sequence
(BLAST)

001: MDSVFFLAGF QIEGTLVAPP KRSYWIEDTI RHWILFRSVR GLTVTDGGTI DGNGKIWWQN SCKVNTKLPC RQAPTALTFY SCTNLKVNNL EVLNSQQIHI
101: SMERCSNVRM SRLSIRAPGT SPNTDDIHIT HSKDVKVMDC AIKTGDDCMS IEDGTENLHV KNIVCGPGHG ISIGSLGDRN SQAQVANITI DGVRLHDTTN
201: GARIKIWQGG RGYAKNIVFK NMIMDNVRDP IIIDQNYCDS ATPCTKQKAA VEVSNVLFKN IRGTRASREA IKLSCSKAVP CHGIALHNVR LTLKRGGGDA
301: KSTCQNAKRR KLGTVMPQPC SLND

Best Arabidopsis Sequence Match ( AT1G70500.1 )
(BLAST)

001: MIKPFIISLF ALLMVASYGA TGKMLFKELD ILGKLENLDV PEDDIEDDVT FFDFSSFTSQ YSGKNLVNVD SFNASGDGVS DDTQAFIRAW TMACSAPNSV
101: LLVPQGRSYL VNATKFDGPC QEKLIIQIDG TIIAPDEPSQ WDPKFPRNWL QFSKLQGVVF QGNGVIDGSG TKWWAASCKK NKSNPCVGAP TALTIYSSSN
201: VYVRGLTIRN SQQMHLIIQR STTVRISRVM VTSPGDSPNT DGIHITASTD VVVQDSKIST GDDCVSIVNG SAKIKMKRIY CGPGHGISIG SLGQGHSKGT
301: VTAVVLETAF LKNTTNGLRI KTWQGGNGYV KGVRFENVVM QDVANPIIID QFYCDSPSTC QNQTSAVHIS EIMYRNITGT TKSSKAINFK CSDAVPCSHI
401: VLNNINLEGN DGKVEAYCNS AEGFGYGVVH PSADCLYSHD DKSLNQTDQY LAETIMVEKE TENAHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAL5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.