Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 4
- plasma membrane 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69569 | Canola | extracellular | 89.2 | 88.38 |
| CDY09873 | Canola | extracellular | 88.74 | 87.93 |
| Bra008748.1-P | Field mustard | extracellular | 88.51 | 87.7 |
| KRH56581 | Soybean | extracellular | 62.3 | 61.73 |
| KRG93260 | Soybean | extracellular | 62.53 | 61.4 |
| Os01t0637500-00 | Rice | cytosol, extracellular | 46.9 | 60.35 |
| Os05t0578600-01 | Rice | cytosol, extracellular | 42.3 | 58.97 |
| VIT_14s0066g01060.t01 | Wine grape | extracellular | 64.6 | 58.18 |
| Solyc07g015870.2.1 | Tomato | extracellular | 57.01 | 55.23 |
| PGSC0003DMT400077010 | Potato | cytosol | 58.16 | 54.64 |
| HORVU3Hr1G031180.1 | Barley | extracellular | 17.47 | 53.9 |
| GSMUA_Achr4P02960_001 | Banana | extracellular | 58.85 | 53.89 |
| GSMUA_Achr6P22080_001 | Banana | extracellular | 59.77 | 53.61 |
| GSMUA_Achr5P09080_001 | Banana | extracellular | 59.77 | 53.39 |
| GSMUA_Achr1P27280_001 | Banana | extracellular | 59.54 | 50.78 |
| EES01142 | Sorghum | extracellular | 60.0 | 49.06 |
| Os01t0636500-01 | Rice | extracellular | 60.0 | 48.51 |
| Zm00001d044110_P001 | Maize | extracellular | 60.23 | 48.34 |
| HORVU3Hr1G056270.10 | Barley | extracellular | 59.08 | 48.31 |
| AT1G60590.1 | Thale cress | extracellular | 59.77 | 48.15 |
| TraesCS1A01G418000.1 | Wheat | extracellular | 56.32 | 48.04 |
| Zm00001d011444_P002 | Maize | extracellular | 59.54 | 47.87 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 58.16 | 47.56 |
| TraesCS3A01G225800.2 | Wheat | extracellular | 58.85 | 47.5 |
| TraesCS3B01G258600.2 | Wheat | extracellular | 58.16 | 47.11 |
| TraesCS3D01G223900.1 | Wheat | extracellular | 57.93 | 47.01 |
| EES20001 | Sorghum | extracellular | 57.93 | 46.93 |
| TraesCS1D01G425600.1 | Wheat | extracellular | 56.78 | 46.87 |
| TraesCS1B01G448100.1 | Wheat | extracellular | 57.01 | 46.79 |
| Zm00001d009667_P001 | Maize | extracellular, mitochondrion, plastid | 54.71 | 46.12 |
| HORVU1Hr1G091430.5 | Barley | extracellular | 57.01 | 44.77 |
| AT3G26610.1 | Thale cress | extracellular | 45.29 | 41.91 |
| AT1G56710.1 | Thale cress | extracellular | 40.69 | 40.78 |
| AT1G48100.1 | Thale cress | extracellular | 43.91 | 40.21 |
| AT1G02460.1 | Thale cress | extracellular | 44.6 | 39.51 |
| AT4G01890.1 | Thale cress | extracellular | 41.84 | 38.97 |
| AT4G35670.1 | Thale cress | extracellular | 35.17 | 38.83 |
| AT5G44830.1 | Thale cress | extracellular | 28.74 | 37.65 |
| AT3G57510.1 | Thale cress | extracellular | 37.24 | 37.59 |
| AT5G39910.1 | Thale cress | extracellular | 32.18 | 37.53 |
| AT2G41850.1 | Thale cress | extracellular | 37.01 | 37.18 |
| AT1G80170.1 | Thale cress | extracellular | 37.93 | 37.16 |
| AT1G23460.1 | Thale cress | extracellular | 39.08 | 36.96 |
| AT1G70500.1 | Thale cress | extracellular | 38.85 | 36.11 |
| AT3G07970.1 | Thale cress | extracellular | 36.09 | 35.76 |
| AT5G44840.1 | Thale cress | extracellular | 31.95 | 35.55 |
| AT1G80140.1 | Thale cress | extracellular | 27.13 | 35.12 |
| AT5G17200.1 | Thale cress | extracellular | 32.64 | 33.73 |
| AT3G15720.1 | Thale cress | extracellular | 34.71 | 33.11 |
| AT5G27530.1 | Thale cress | cytosol | 34.71 | 32.97 |
| AT4G32370.1 | Thale cress | extracellular | 24.37 | 30.99 |
| AT4G32380.1 | Thale cress | extracellular | 27.13 | 26.05 |
| AT4G32375.1 | Thale cress | extracellular | 22.53 | 23.17 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:21.3.5.1.3 | EntrezGene:831317 | ProteinID:AED92058.1 | ArrayExpress:AT5G14650 | EnsemblPlantsGene:AT5G14650 |
| RefSeq:AT5G14650 | TAIR:AT5G14650 | RefSeq:AT5G14650-TAIR-G | EnsemblPlants:AT5G14650.1 | TAIR:AT5G14650.1 | ProteinID:CAB87632.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_196969.1 | PFAM:PF00295 |
| PO:PO:0001081 | PO:PO:0007098 | PO:PO:0007611 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020100 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF34 |
| InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q9LYJ5 | SMART:SM00710 | SUPFAM:SSF51126 |
| SignalP:SignalP-noTM | UniParc:UPI0000048B33 | SEG:seg | : | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LYJ5]
Coordinates
chr5:+:4724407..4726675
Molecular Weight (calculated)
46483.3 Da
IEP (calculated)
7.955
GRAVY (calculated)
-0.148
Length
435 amino acids
Sequence
(BLAST)
(BLAST)
001: MCRLTLKCLS LNFLLLISLF SSRFGTCDAR YSVYWKGNRR SIAEGGSSGT INVLDHGAKG DGTSDDTKAF EDAWQVACKV AASTLLVPSG STFLVGPVSF
101: LGKECKEKIV FQLEGKIIAP TSASAWGSGL LQWIEFKALQ GITIKGKGII DGRGSVWWND MMGTKMPRTK PTALRFYGSN GVTVSGITIQ NSPQTHLKFD
201: NCISIQVSDF TTSSPGDSPN TDGIHLQNSQ DAVIYRSTLA CGDDCISIQT GCSNINIHDV DCGPGHGISI GGLGKDNTKA CVSNITVRDV TMHETTNGVR
301: IKSWQGGSGS VKQVMFSNIQ VSNVANPIII DQYYCDGGGC HNETSAVAVS NINYINIKGT YTKEPVRFAC SDSLPCTGIS LSTIELKPAT GKASSLDPFC
401: WKAHGELKTK TLPPIQCLKT EKSPEAASRS NNDAC
101: LGKECKEKIV FQLEGKIIAP TSASAWGSGL LQWIEFKALQ GITIKGKGII DGRGSVWWND MMGTKMPRTK PTALRFYGSN GVTVSGITIQ NSPQTHLKFD
201: NCISIQVSDF TTSSPGDSPN TDGIHLQNSQ DAVIYRSTLA CGDDCISIQT GCSNINIHDV DCGPGHGISI GGLGKDNTKA CVSNITVRDV TMHETTNGVR
301: IKSWQGGSGS VKQVMFSNIQ VSNVANPIII DQYYCDGGGC HNETSAVAVS NINYINIKGT YTKEPVRFAC SDSLPCTGIS LSTIELKPAT GKASSLDPFC
401: WKAHGELKTK TLPPIQCLKT EKSPEAASRS NNDAC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.