Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 5
- golgi 5
- extracellular 7
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025216.1-P | Field mustard | extracellular | 88.09 | 88.09 |
| CDX83631 | Canola | extracellular | 88.09 | 87.9 |
| CDY13645 | Canola | extracellular | 87.66 | 87.66 |
| KRH69612 | Soybean | extracellular | 61.49 | 62.55 |
| KRH74551 | Soybean | extracellular | 61.06 | 62.26 |
| VIT_01s0127g00120.t01 | Wine grape | extracellular | 61.7 | 60.54 |
| Solyc05g005040.2.1 | Tomato | extracellular | 58.51 | 58.39 |
| PGSC0003DMT400035101 | Potato | extracellular, golgi | 58.72 | 57.38 |
| Os01t0549000-00 | Rice | extracellular | 33.19 | 54.93 |
| GSMUA_Achr1P12720_001 | Banana | extracellular | 47.45 | 54.39 |
| KXG32718 | Sorghum | extracellular | 46.6 | 50.23 |
| Zm00001d011156_P001 | Maize | plastid | 46.17 | 49.77 |
| AT5G14650.1 | Thale cress | extracellular | 41.91 | 45.29 |
| AT1G60590.1 | Thale cress | extracellular | 46.6 | 40.56 |
| AT1G56710.1 | Thale cress | extracellular | 36.6 | 39.63 |
| AT1G48100.1 | Thale cress | extracellular | 39.57 | 39.16 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 44.04 | 38.91 |
| AT4G01890.1 | Thale cress | extracellular | 38.09 | 38.33 |
| AT1G02460.1 | Thale cress | extracellular | 37.87 | 36.25 |
| AT1G80140.1 | Thale cress | extracellular | 25.74 | 36.01 |
| AT2G41850.1 | Thale cress | extracellular | 32.13 | 34.87 |
| AT3G57510.1 | Thale cress | extracellular | 31.91 | 34.8 |
| AT4G35670.1 | Thale cress | extracellular | 29.15 | 34.77 |
| AT5G44830.1 | Thale cress | extracellular | 24.47 | 34.64 |
| AT1G70500.1 | Thale cress | extracellular | 34.47 | 34.62 |
| AT1G23460.1 | Thale cress | extracellular | 33.83 | 34.57 |
| AT3G07970.1 | Thale cress | extracellular | 31.91 | 34.17 |
| AT5G39910.1 | Thale cress | extracellular | 27.02 | 34.05 |
| AT1G80170.1 | Thale cress | extracellular | 32.13 | 34.01 |
| AT5G44840.1 | Thale cress | extracellular | 27.45 | 32.99 |
| AT3G15720.1 | Thale cress | extracellular | 31.49 | 32.46 |
| AT4G32370.1 | Thale cress | extracellular | 23.62 | 32.46 |
| AT5G27530.1 | Thale cress | cytosol | 30.64 | 31.44 |
| AT5G17200.1 | Thale cress | extracellular | 26.6 | 29.69 |
| AT4G32380.1 | Thale cress | extracellular | 24.04 | 24.94 |
| AT4G32375.1 | Thale cress | extracellular | 21.28 | 23.64 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:21.3.5.1.3 | EntrezGene:822270 | ProteinID:AEE77185.1 | EMBL:AK117620 | ArrayExpress:AT3G26610 |
| EnsemblPlantsGene:AT3G26610 | RefSeq:AT3G26610 | TAIR:AT3G26610 | RefSeq:AT3G26610-TAIR-G | EnsemblPlants:AT3G26610.1 | TAIR:AT3G26610.1 |
| Unigene:At.37184 | ProteinID:BAB01843.1 | ProteinID:CAA66811.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009653 | GO:GO:0009826 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016049 |
| GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016829 | GO:GO:0040007 | GO:GO:0045490 | GO:GO:0048046 |
| GO:GO:0052546 | GO:GO:0060773 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_189293.1 |
| PFAM:PF00295 | PO:PO:0009005 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF92 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | UniProt:Q38958 | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-TM | TMHMM:TMhelix |
| UniParc:UPI0000048787 | SEG:seg | : | : | : | : |
Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
Coordinates
chr3:+:9776958..9780553
Molecular Weight (calculated)
51086.4 Da
IEP (calculated)
9.651
GRAVY (calculated)
-0.223
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.