Factsheet for PGSC0003DMT400035101

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005040.2.1	Tomato	extracellular	91.06	92.99
VIT_01s0127g00120.t01	Wine grape	extracellular	70.48	70.77
KRH74551	Soybean	extracellular	62.58	65.29
KRH69612	Soybean	extracellular	61.54	64.07
AT3G26610.1	Thale cress	extracellular	57.38	58.72
Bra025216.1-P	Field mustard	extracellular	56.55	57.87
CDY13645	Canola	extracellular	56.13	57.45
CDX83631	Canola	extracellular	56.13	57.32
GSMUA_Achr1P12720_001	Banana	extracellular	48.02	56.34
Os01t0549000-00	Rice	extracellular	29.73	50.35
KXG32718	Sorghum	extracellular	44.49	49.08
Zm00001d011156_P001	Maize	plastid	43.24	47.71
PGSC0003DMT400077010	Potato	cytosol	42.2	43.84
PGSC0003DMT400035162	Potato	extracellular	46.36	43.64
PGSC0003DMT400007095	Potato	cytosol	36.17	40.0
PGSC0003DMT400075723	Potato	extracellular	39.5	39.09
PGSC0003DMT400017691	Potato	extracellular	28.27	38.75
PGSC0003DMT400056828	Potato	extracellular	31.39	37.94
PGSC0003DMT400013344	Potato	extracellular	37.01	37.71
PGSC0003DMT400008955	Potato	extracellular	26.82	37.07
PGSC0003DMT400001638	Potato	extracellular, plastid	32.43	34.74
PGSC0003DMT400080722	Potato	extracellular	31.81	33.26
PGSC0003DMT400055713	Potato	extracellular	29.94	31.44
PGSC0003DMT400070039	Potato	cytosol	26.2	30.73

Protein Annotations

EntrezGene:102592711	Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:M1B1U1	PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400013497	PGSC:PGSC0003DMG400013497	EnsemblPlants:PGSC0003DMT400035101
PANTHER:PTHR31375	PANTHER:PTHR31375:SF92	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-TM
TMHMM:TMhelix	UniParc:UPI000296C457	RefSeq:XP_006356444.1	SEG:seg	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400013497]

Coordinates

chr5:+:9523854..9529432

Molecular Weight (calculated)

53075.6 Da

IEP (calculated)

9.131

GRAVY (calculated)

-0.249

Length

481 amino acids

Sequence
(BLAST)

001: MKKNYRHTSF IFLFVLLLIF ATTFSIISVD ARKHHHNKKS KIHHKHKKQQ KNGDGNKAPN CTNSPSPAPS SSHGFYPTQS PIFNILSFGA KGDGATDDTK
101: ALEAAWEAAC KVQGATLEIP TEFQFLINPI TLQGPCMPNF VFQVDGIILA PPKVGSWPKS SLFQWLNVKW MYNFTIQGTG TLDGQGYNWW KLSQIDYFQV
201: MKKSKNTPDM KPTVLRFYGS YNVTIRDIKI INSPQCHLKF DNSKGVKINN VTISAPEISP NTDGIHLQNT QDVEIHHSNI GTGDDCISIQ TGCSNIHVHH
301: LNCGPGHGIS LGGLGKDKSV ACVSDIIVDS VNFASTMYGA RIKTWQGGVG SVKNISFSNI QVSNVKVPIM IDQYYCDKHV CKNQTGAVAI SNVQFNQIIG
401: TYSTKPIHLA CSNSIPCTDV DLIDIQLKPS TNYRGINQLG LCWNSYGKSQ APLLPSSMDY CVRRGSGLVR GISRSHEHVC L

Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)

001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.