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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • plastid 2
  • extracellular 6
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 4
  • vacuole 4
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY13645 Canola extracellular 97.66 97.87
AT3G26610.1 Thale cress extracellular 87.9 88.09
KRH74551 Soybean extracellular 60.3 61.61
KRH69612 Soybean extracellular 59.87 61.04
VIT_01s0127g00120.t01 Wine grape extracellular 61.36 60.33
Solyc05g005040.2.1 Tomato extracellular 56.9 56.9
PGSC0003DMT400035101 Potato extracellular, golgi 57.32 56.13
GSMUA_Achr1P12720_001 Banana extracellular 47.13 54.15
Os01t0549000-00 Rice extracellular 32.48 53.87
KXG32718 Sorghum extracellular 45.86 49.54
Zm00001d011156_P001 Maize plastid 45.22 48.85
CDX69569 Canola extracellular 41.4 44.42
CDY09873 Canola extracellular 40.98 43.96
CDY67535 Canola extracellular 26.75 40.51
CDY50367 Canola extracellular, golgi 45.65 40.11
CDX95284 Canola extracellular 34.39 40.1
CDY47212 Canola extracellular 45.44 39.93
CDY41695 Canola extracellular 36.73 39.77
CDY54228 Canola extracellular, golgi, vacuole 44.37 39.58
CDY20612 Canola extracellular 44.59 39.55
CDY20962 Canola extracellular, golgi, vacuole 44.37 39.36
CDY37962 Canola extracellular, golgi, vacuole 44.37 39.29
CDX93397 Canola extracellular, golgi, vacuole 44.37 39.21
CDX93644 Canola extracellular 38.85 38.77
CDY43307 Canola extracellular 38.85 38.69
CDY34877 Canola extracellular, golgi 39.49 38.04
CDY38648 Canola cytosol 30.15 37.97
CDY04708 Canola plastid 22.29 37.91
CDY37571 Canola cytosol 29.94 37.7
CDX77909 Canola extracellular 38.22 36.66
CDX72025 Canola extracellular 32.91 35.88
CDY14791 Canola extracellular 32.91 35.8
CDX67693 Canola extracellular 32.7 35.57
CDY06902 Canola extracellular 32.7 35.57
CDX89966 Canola extracellular 36.73 35.23
CDY15246 Canola extracellular 36.73 35.23
CDY54312 Canola extracellular 32.7 34.68
CDY56952 Canola extracellular 31.0 34.68
CDX74418 Canola extracellular 31.0 34.6
CDY47032 Canola extracellular 29.51 34.49
CDY57689 Canola extracellular 32.7 34.45
CDY35976 Canola extracellular 30.79 34.44
CDY48768 Canola extracellular 31.63 34.25
CDY69377 Canola extracellular 29.09 34.25
CDY28005 Canola extracellular 30.57 34.2
CDY11585 Canola extracellular 33.76 34.05
CDX79907 Canola extracellular 31.42 34.02
CDX72553 Canola extracellular 29.09 33.99
CDY54292 Canola cytosol 32.06 33.86
CDY39404 Canola extracellular 28.66 33.83
CDY47139 Canola extracellular 33.55 33.83
CDY25786 Canola cytosol 31.85 33.63
CDX73440 Canola extracellular 28.45 33.5
CDY39399 Canola extracellular 28.45 33.5
CDY50769 Canola extracellular 24.2 33.33
CDX85471 Canola extracellular 28.66 33.25
CDY07963 Canola extracellular 30.79 33.1
CDY30105 Canola extracellular 31.42 32.96
CDX97703 Canola extracellular 31.42 32.74
CDX74019 Canola extracellular 30.36 32.72
CDY71357 Canola extracellular, vacuole 21.87 32.49
CDY58462 Canola extracellular 31.21 32.45
CDX75843 Canola extracellular 31.21 32.45
CDX97704 Canola extracellular 31.0 32.02
CDY30107 Canola extracellular 30.79 31.8
CDY44150 Canola extracellular, golgi, plastid 33.76 31.67
CDY02729 Canola extracellular 28.66 31.54
CDX75239 Canola cytosol 26.54 30.79
CDX68839 Canola cytosol 26.11 30.3
CDY16952 Canola extracellular 27.18 29.49
CDX69397 Canola extracellular 24.42 28.47
CDY41445 Canola endoplasmic reticulum 33.33 28.24
CDY61868 Canola extracellular 31.85 27.32
CDY39884 Canola extracellular 25.69 27.19
CDY06100 Canola extracellular 22.08 24.36
Protein Annotations
Gene3D:2.160.20.10MapMan:21.3.5.1.3GO:A0A078D2M9EnsemblPlants:CDX83631ProteinID:CDX83631ProteinID:CDX83631.1
GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005975GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00139307001InterPro:Glyco_hydro_28
InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF92InterPro:PbH1
InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126TMHMM:TMhelixUniParc:UPI0004EE597D
SEG:seg:::::
Description
BnaC07g23710D
Coordinates
chrLK031833:+:1225906..1229687
Molecular Weight (calculated)
51415.8 Da
IEP (calculated)
9.135
GRAVY (calculated)
-0.213
Length
471 amino acids
Sequence
(BLAST)
001: MKILKRSPLL AMLIGFIIIA AAISTISVEG RKHHVKRIKP KHRRHSKDTP TGSPAPAPYP STHDGVFDIL SFGAKGDGIS DDSKALIGAW KAACRVAGGK
101: VEIPAGKEFM VKAVTLQGPC KEETVVQIEG TLVAPTKIGS WPKSSLFQWL NFKWVSHVTI QGSGTLDARG YNWWNLDNYQ TQKRNKYIPP MKPTALRFYS
201: SGNVMVRDIS IVNSPLCHLK FDDSDGVKIN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HISCGPGHGI SIGSLGKDET
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVTDVQVPI VIDQYYCDKS KCKNQTSAVS ISDVKYNNIV GSFTAQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQHALCWNS YGKTQGPLVP SSIGYCLKKS NIDGYYPKRF IASSHEKLCP L
Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)
001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.