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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 5
  • golgi 3
  • plasma membrane 3
  • endoplasmic reticulum 3
  • vacuole 3
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:nucleus, secretory
BaCelLo:secretory
iPSORT:plastid
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
WoLF PSORT:nucleus
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74418 Canola extracellular 99.76 99.53
Bra025631.1-P Field mustard extracellular 97.15 96.92
AT5G39910.1 Thale cress extracellular 66.98 75.6
VIT_17s0000g05660.t01 Wine grape extracellular 40.62 44.19
VIT_17s0000g05670.t01 Wine grape extracellular 40.62 43.51
Solyc03g113230.1.1 Tomato extracellular 41.33 42.34
CDX85471 Canola extracellular 38.48 39.9
CDY47032 Canola extracellular 37.29 38.96
CDX72553 Canola extracellular 37.29 38.96
CDY39404 Canola extracellular 36.82 38.85
CDY50769 Canola extracellular 31.35 38.6
CDY69377 Canola extracellular 36.58 38.5
CDY02729 Canola extracellular 38.48 37.85
CDY37571 Canola cytosol 33.25 37.43
CDY38648 Canola cytosol 33.02 37.17
CDX73440 Canola extracellular 35.15 37.0
CDX67693 Canola extracellular 37.29 36.26
CDY39399 Canola extracellular 34.44 36.25
CDY04708 Canola plastid 23.75 36.1
CDY16952 Canola extracellular 37.05 35.94
CDY35976 Canola extracellular 35.87 35.87
CDY41695 Canola extracellular 37.05 35.86
CDY06902 Canola extracellular 36.82 35.8
CDY14791 Canola extracellular 36.82 35.8
CDX72025 Canola extracellular 36.58 35.65
CDY28005 Canola extracellular 35.63 35.63
CDY48768 Canola extracellular 36.58 35.4
CDY67535 Canola extracellular 26.13 35.37
CDY09873 Canola extracellular 36.82 35.31
CDX79907 Canola extracellular 36.34 35.17
CDX69569 Canola extracellular 36.58 35.08
CDY07963 Canola extracellular 36.1 34.7
CDY54312 Canola extracellular 36.58 34.68
CDY57689 Canola extracellular 36.82 34.68
CDX95284 Canola extracellular 33.25 34.65
CDX74019 Canola extracellular 35.87 34.55
CDX97704 Canola extracellular 37.29 34.43
CDX69397 Canola extracellular 33.02 34.41
CDY30107 Canola extracellular 37.05 34.21
CDY30105 Canola extracellular 36.34 34.08
CDX75843 Canola extracellular 36.58 34.0
CDY58462 Canola extracellular 36.58 34.0
CDY11585 Canola extracellular 37.53 33.83
CDY47139 Canola extracellular 37.53 33.83
CDX97703 Canola extracellular 35.87 33.41
CDY54292 Canola cytosol 35.15 33.18
CDY25786 Canola cytosol 34.92 32.96
CDX68839 Canola cytosol 31.12 32.27
CDX75239 Canola cytosol 31.12 32.27
CDX93644 Canola extracellular 35.63 31.78
CDX77909 Canola extracellular 37.05 31.77
CDY43307 Canola extracellular 35.63 31.71
CDX89966 Canola extracellular 36.82 31.57
CDY15246 Canola extracellular 36.58 31.36
CDY13645 Canola extracellular 34.68 31.06
CDX83631 Canola extracellular 34.68 31.0
CDY44150 Canola extracellular, golgi, plastid 36.34 30.48
Zm00001d039668_P001 Maize plastid 31.59 30.43
Os01t0172900-00 Rice nucleus 21.14 30.17
CDY71357 Canola extracellular, vacuole 22.57 29.97
CDY54228 Canola extracellular, golgi, vacuole 37.29 29.73
CDY20962 Canola extracellular, golgi, vacuole 37.05 29.38
CDY34877 Canola extracellular, golgi 33.97 29.24
CDY39884 Canola extracellular 30.88 29.21
CDY20612 Canola extracellular 36.82 29.19
CDY37962 Canola extracellular, golgi, vacuole 36.58 28.95
CDX93397 Canola extracellular, golgi, vacuole 36.58 28.89
CDY50367 Canola extracellular, golgi 36.34 28.54
CDY47212 Canola extracellular 36.34 28.54
CDY61868 Canola extracellular 36.1 27.69
CDY41445 Canola endoplasmic reticulum 36.34 27.52
CDY06100 Canola extracellular 24.94 24.59
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078J1F2UniProt:A0A078J1F2EnsemblPlants:CDY56952ProteinID:CDY56952
ProteinID:CDY56952.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005576
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787
GO:GO:0016798GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00020307001InterPro:Glyco_hydro_28InterPro:IPR012334PFAM:PF00295
ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF41InterPro:PbH1InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulence
SMART:SM00710SUPFAM:SSF51126SignalP:SignalP-noTMUniParc:UPI0004EB02C2SEG:seg:
Description
BnaC04g56090DBnaC04g56090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J1F2]
Coordinates
chrLK033534:+:52220..55755
Molecular Weight (calculated)
47288.3 Da
IEP (calculated)
8.152
GRAVY (calculated)
-0.435
Length
421 amino acids
Sequence
(BLAST)
001: MDFFMLLTYL FSLFHNNQTG PSHSSPDVNS KIFNVFNYGA IGNGYADDTK AFMDAWEDTC NYIGSKSTME IPQGRTFLLQ PIGFHGPCKS KKIVFSISGN
101: LTAPYAPYQW KCNEDYCHQW IEFAHINGLY IDGPGTIDGQ GPKWWSLNCK KYEQACHRRP RGMVISHSSN VHISNIVVKD SPNFQMSLED SKWIFVKQLT
201: ITADGDSPNT DGIHIQRCRN VFVHNSNIHT GDDCISIGDG SKYVNISGIS CGPGHGISIG SLGRNGSKET VENVIVRDCI FRKTDNGVRI KTWQGGRGLV
301: RNILFERIKL HGVTRPIIID QFYCPHSQCN NHTDAVEIKN IMYKHIHGTA VKKPFVELLC SKSVPCRDIY MNDIDILDQD EGKGKKYHKR SSHPPAECIN
401: VRGESNGAIK PKLACLDSER H
Best Arabidopsis Sequence Match ( AT5G39910.1 )
(BLAST)
001: MANFVMFLNF LLSLTVFHTF QSVQSHFSLY NDNNIFNVLN YGAIGDGFSD DSKAFKDAWE DTCNYIGSES IMEIPEGNTF LLQPIEFHGP CKSKKIILSI
101: SGNLIAPESP YEWKCNKDDC HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV IVKQLTITAD GDSPNTDGIH
201: IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK
301: KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV MKPKLACLES KRH
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KFW5]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.