Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56952 | Canola | extracellular | 99.53 | 99.76 |
| Bra025631.1-P | Field mustard | extracellular | 96.68 | 96.68 |
| AT5G39910.1 | Thale cress | extracellular | 66.59 | 75.34 |
| VIT_17s0000g05660.t01 | Wine grape | extracellular | 40.52 | 44.19 |
| VIT_17s0000g05670.t01 | Wine grape | extracellular | 40.28 | 43.26 |
| Solyc03g113230.1.1 | Tomato | extracellular | 41.0 | 42.09 |
| CDX85471 | Canola | extracellular | 38.15 | 39.66 |
| CDX72553 | Canola | extracellular | 36.97 | 38.71 |
| CDY47032 | Canola | extracellular | 36.97 | 38.71 |
| CDY39404 | Canola | extracellular | 36.49 | 38.6 |
| CDY50769 | Canola | extracellular | 31.04 | 38.3 |
| CDY69377 | Canola | extracellular | 36.26 | 38.25 |
| CDY02729 | Canola | extracellular | 38.15 | 37.62 |
| CDY37571 | Canola | cytosol | 33.18 | 37.43 |
| CDY38648 | Canola | cytosol | 32.94 | 37.17 |
| CDX73440 | Canola | extracellular | 34.83 | 36.75 |
| CDY35976 | Canola | extracellular | 36.02 | 36.1 |
| CDY04708 | Canola | plastid | 23.7 | 36.1 |
| CDX67693 | Canola | extracellular | 36.97 | 36.03 |
| CDY39399 | Canola | extracellular | 34.12 | 36.0 |
| CDY28005 | Canola | extracellular | 35.78 | 35.87 |
| CDY41695 | Canola | extracellular | 36.97 | 35.86 |
| CDY16952 | Canola | extracellular | 36.73 | 35.71 |
| CDY06902 | Canola | extracellular | 36.49 | 35.57 |
| CDY14791 | Canola | extracellular | 36.49 | 35.57 |
| CDX72025 | Canola | extracellular | 36.26 | 35.42 |
| CDY67535 | Canola | extracellular | 26.07 | 35.37 |
| CDY48768 | Canola | extracellular | 36.26 | 35.17 |
| CDY09873 | Canola | extracellular | 36.49 | 35.08 |
| CDX79907 | Canola | extracellular | 36.02 | 34.94 |
| CDY07963 | Canola | extracellular | 36.26 | 34.93 |
| CDX69569 | Canola | extracellular | 36.26 | 34.85 |
| CDX74019 | Canola | extracellular | 36.02 | 34.78 |
| CDX95284 | Canola | extracellular | 33.18 | 34.65 |
| CDX97704 | Canola | extracellular | 37.44 | 34.65 |
| CDY54312 | Canola | extracellular | 36.26 | 34.46 |
| CDY57689 | Canola | extracellular | 36.49 | 34.45 |
| CDY30107 | Canola | extracellular | 37.2 | 34.43 |
| CDX69397 | Canola | extracellular | 32.7 | 34.16 |
| CDY30105 | Canola | extracellular | 36.26 | 34.08 |
| CDY47139 | Canola | extracellular | 37.44 | 33.83 |
| CDY11585 | Canola | extracellular | 37.44 | 33.83 |
| CDX75843 | Canola | extracellular | 36.26 | 33.77 |
| CDY58462 | Canola | extracellular | 36.26 | 33.77 |
| CDX97703 | Canola | extracellular | 35.78 | 33.41 |
| CDY54292 | Canola | cytosol | 34.83 | 32.96 |
| CDY25786 | Canola | cytosol | 34.6 | 32.74 |
| CDX68839 | Canola | cytosol | 31.04 | 32.27 |
| CDX75239 | Canola | cytosol | 31.04 | 32.27 |
| CDX93644 | Canola | extracellular | 35.55 | 31.78 |
| CDY43307 | Canola | extracellular | 35.55 | 31.71 |
| CDX77909 | Canola | extracellular | 36.73 | 31.57 |
| CDX89966 | Canola | extracellular | 36.49 | 31.36 |
| CDY15246 | Canola | extracellular | 36.26 | 31.16 |
| CDY13645 | Canola | extracellular | 34.6 | 31.06 |
| CDX83631 | Canola | extracellular | 34.6 | 31.0 |
| CDY44150 | Canola | extracellular, golgi, plastid | 36.26 | 30.48 |
| Zm00001d039668_P001 | Maize | plastid | 31.28 | 30.21 |
| Os01t0172900-00 | Rice | nucleus | 20.85 | 29.83 |
| CDY71357 | Canola | extracellular, vacuole | 22.27 | 29.65 |
| CDY54228 | Canola | extracellular, golgi, vacuole | 36.97 | 29.55 |
| CDY39884 | Canola | extracellular | 30.81 | 29.21 |
| CDY20962 | Canola | extracellular, golgi, vacuole | 36.73 | 29.19 |
| CDY34877 | Canola | extracellular, golgi | 33.65 | 29.04 |
| CDY20612 | Canola | extracellular | 36.49 | 29.0 |
| CDY37962 | Canola | extracellular, golgi, vacuole | 36.26 | 28.76 |
| CDX93397 | Canola | extracellular, golgi, vacuole | 36.26 | 28.71 |
| CDY50367 | Canola | extracellular, golgi | 36.26 | 28.54 |
| CDY47212 | Canola | extracellular | 36.26 | 28.54 |
| CDY61868 | Canola | extracellular | 35.78 | 27.5 |
| CDY41445 | Canola | endoplasmic reticulum | 36.02 | 27.34 |
| CDY06100 | Canola | extracellular | 24.64 | 24.36 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | GO:A0A078CHF7 | EnsemblPlants:CDX74418 | ProteinID:CDX74418 | ProteinID:CDX74418.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0071555 | EnsemblPlantsGene:GSBRNA2T00114269001 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF41 | InterPro:PbH1 |
| InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0004EE7C7B |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g09710D
Coordinates
chrLK031801:+:77745..80627
Molecular Weight (calculated)
47329.3 Da
IEP (calculated)
8.152
GRAVY (calculated)
-0.423
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFFMLLTYL FSLFHNNQTA GPSHSSPDVN SKIFNVFNYG AIGNGYADDT KAFMDAWEDT CNYIGSKSTM EIPQGRAFLL QPIGFHGPCK SKKIVFSISG
101: NLTAPYAPYQ WKCNEDYCHQ WIEFAHINGL YIDGPGTIDG QGPKWWSLNC KKYEQACHRR PRGMVISHSS NVHISNIVVK DSPNFQMSLE DSKWIFVKQL
201: TITADGDSPN TDGIHIQRCR NVFVHNSNIH TGDDCISIGD GSKYVNISGI SCGPGHGISI GSLGRNGSKE TVENVIVRDC IFRKTDNGVR IKTWQGGRGL
301: VRNILFERIK LHGVTRPIII DQFYCPHSQC NNHTDAVEIK NIMYKHIHGT AVKKPFVELL CSKSVPCRDI YMNDIDILDQ DEGKGKKYHK RSSHPPAECI
401: NVRGESNGAI KPKLACLDSE RH
101: NLTAPYAPYQ WKCNEDYCHQ WIEFAHINGL YIDGPGTIDG QGPKWWSLNC KKYEQACHRR PRGMVISHSS NVHISNIVVK DSPNFQMSLE DSKWIFVKQL
201: TITADGDSPN TDGIHIQRCR NVFVHNSNIH TGDDCISIGD GSKYVNISGI SCGPGHGISI GSLGRNGSKE TVENVIVRDC IFRKTDNGVR IKTWQGGRGL
301: VRNILFERIK LHGVTRPIII DQFYCPHSQC NNHTDAVEIK NIMYKHIHGT AVKKPFVELL CSKSVPCRDI YMNDIDILDQ DEGKGKKYHK RSSHPPAECI
401: NVRGESNGAI KPKLACLDSE RH
001: MANFVMFLNF LLSLTVFHTF QSVQSHFSLY NDNNIFNVLN YGAIGDGFSD DSKAFKDAWE DTCNYIGSES IMEIPEGNTF LLQPIEFHGP CKSKKIILSI
101: SGNLIAPESP YEWKCNKDDC HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV IVKQLTITAD GDSPNTDGIH
201: IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK
301: KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV MKPKLACLES KRH
101: SGNLIAPESP YEWKCNKDDC HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV IVKQLTITAD GDSPNTDGIH
201: IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK
301: KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV MKPKLACLES KRH
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KFW5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.