Factsheet for AT5G39910.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

endoplasmic reticulum 5
golgi 5
extracellular 7
vacuole 4
plasma membrane 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	endoplasmic reticulum, extracellular, golgi
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56952	Canola	extracellular	75.6	66.98
CDX74418	Canola	extracellular	75.34	66.59
Bra025631.1-P	Field mustard	extracellular	73.46	64.93
VIT_17s0000g05660.t01	Wine grape	extracellular	39.68	38.24
VIT_17s0000g05670.t01	Wine grape	extracellular	40.21	38.17
Solyc03g113230.1.1	Tomato	extracellular	40.48	36.74
AT5G44830.1	Thale cress	extracellular	31.9	35.84
AT4G35670.1	Thale cress	extracellular	37.0	35.03
AT5G44840.1	Thale cress	extracellular	36.46	34.78
AT5G17200.1	Thale cress	extracellular	37.8	33.49
AT1G80140.1	Thale cress	extracellular	29.49	32.74
AT5G14650.1	Thale cress	extracellular	37.53	32.18
AT3G15720.1	Thale cress	extracellular	38.61	31.58
AT5G27530.1	Thale cress	cytosol	38.07	31.0
AT3G57510.1	Thale cress	extracellular	35.39	30.63
AT3G07970.1	Thale cress	extracellular	35.39	30.07
AT2G41850.1	Thale cress	extracellular	34.85	30.02
AT1G23460.1	Thale cress	extracellular	36.46	29.57
AT4G32370.1	Thale cress	extracellular	26.81	29.24
AT1G80170.1	Thale cress	extracellular	34.32	28.83
AT1G56710.1	Thale cress	extracellular	33.51	28.8
AT1G70500.1	Thale cress	extracellular	35.92	28.63
AT3G26610.1	Thale cress	extracellular	34.05	27.02
Zm00001d039668_P001	Maize	plastid	31.64	27.0
AT4G01890.1	Thale cress	extracellular	33.51	26.77
AT1G02460.1	Thale cress	extracellular	35.12	26.68
AT4G32380.1	Thale cress	extracellular	30.29	24.94
Os01t0172900-00	Rice	nucleus	19.3	24.41
AT1G48100.1	Thale cress	extracellular	30.83	24.21
AT1G10640.1	Thale cress	extracellular, golgi	34.32	24.06
AT1G60590.1	Thale cress	extracellular	33.51	23.15
AT4G32375.1	Thale cress	extracellular	25.47	22.46

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EntrezGene:833988	ProteinID:AED94490.1	ArrayExpress:AT5G39910	EnsemblPlantsGene:AT5G39910
RefSeq:AT5G39910	TAIR:AT5G39910	RefSeq:AT5G39910-TAIR-G	EnsemblPlants:AT5G39910.1	TAIR:AT5G39910.1	Unigene:At.55265
UniProt:F4KFW5	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0016829	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	RefSeq:NP_198807.1
PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF41	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0000048BDB	SEG:seg

Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KFW5]

Coordinates

chr5:-:15979412..15981671

Molecular Weight (calculated)

41951.8 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.349

Length

373 amino acids

Sequence
(BLAST)

001: MANFVMFLNF LLSLTVFHTF QSVQSHFSLY NDNNIFNVLN YGAIGDGFSD DSKAFKDAWE DTCNYIGSES IMEIPEGNTF LLQPIEFHGP CKSKKIILSI
101: SGNLIAPESP YEWKCNKDDC HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV IVKQLTITAD GDSPNTDGIH
201: IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK
301: KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV MKPKLACLES KRH

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.