Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032600.1-P | Field mustard | extracellular | 90.22 | 90.22 |
| CDX77909 | Canola | extracellular | 90.22 | 90.22 |
| CDX89966 | Canola | extracellular | 89.61 | 89.61 |
| Bra033328.1-P | Field mustard | extracellular | 89.21 | 89.21 |
| CDY15246 | Canola | extracellular | 88.8 | 88.8 |
| CDY67535 | Canola | extracellular | 55.6 | 87.78 |
| AT4G01890.1 | Thale cress | extracellular | 65.99 | 69.38 |
| PGSC0003DMT400013344 | Potato | extracellular | 64.56 | 67.16 |
| KRG96576 | Soybean | extracellular | 63.14 | 67.1 |
| KRH68311 | Soybean | extracellular | 63.14 | 67.1 |
| KRH69173 | Soybean | extracellular | 64.15 | 66.6 |
| Solyc01g079130.1.1 | Tomato | extracellular | 63.75 | 66.31 |
| KRH31755 | Soybean | extracellular | 63.95 | 66.11 |
| VIT_07s0005g02090.t01 | Wine grape | extracellular | 62.12 | 65.59 |
| Os01t0296200-00 | Rice | extracellular | 34.01 | 62.78 |
| GSMUA_Achr11P... | Banana | extracellular | 53.77 | 60.55 |
| AT1G56710.1 | Thale cress | extracellular | 50.92 | 57.6 |
| HORVU1Hr1G067840.1 | Barley | extracellular, plastid | 54.18 | 55.88 |
| TraesCS1A01G311100.1 | Wheat | extracellular | 54.38 | 55.17 |
| TraesCS1D01G311000.1 | Wheat | extracellular | 53.77 | 55.11 |
| TraesCS1B01G322500.1 | Wheat | extracellular | 54.18 | 54.96 |
| GSMUA_Achr9P16670_001 | Banana | extracellular, plasma membrane | 55.6 | 54.49 |
| AT1G48100.1 | Thale cress | extracellular | 51.12 | 52.84 |
| Zm00001d040589_P001 | Maize | extracellular | 52.75 | 51.9 |
| EES00620 | Sorghum | extracellular | 52.75 | 51.19 |
| Zm00001d009057_P001 | Maize | extracellular | 43.18 | 50.12 |
| GSMUA_Achr3P08400_001 | Banana | extracellular | 54.38 | 47.51 |
| AT5G14650.1 | Thale cress | extracellular | 39.51 | 44.6 |
| AT1G80170.1 | Thale cress | extracellular | 35.03 | 38.74 |
| AT1G80140.1 | Thale cress | extracellular | 26.27 | 38.39 |
| AT3G57510.1 | Thale cress | extracellular | 33.4 | 38.05 |
| AT3G26610.1 | Thale cress | extracellular | 36.25 | 37.87 |
| AT2G41850.1 | Thale cress | extracellular | 33.2 | 37.64 |
| AT1G70500.1 | Thale cress | extracellular | 35.64 | 37.39 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 40.12 | 37.03 |
| AT1G23460.1 | Thale cress | extracellular | 34.22 | 36.52 |
| AT1G60590.1 | Thale cress | extracellular | 39.71 | 36.11 |
| AT5G39910.1 | Thale cress | extracellular | 26.68 | 35.12 |
| AT4G35670.1 | Thale cress | extracellular | 28.11 | 35.03 |
| AT5G44830.1 | Thale cress | extracellular | 23.42 | 34.64 |
| AT3G15720.1 | Thale cress | extracellular | 31.36 | 33.77 |
| AT5G44840.1 | Thale cress | extracellular | 26.68 | 33.5 |
| AT3G07970.1 | Thale cress | extracellular | 29.74 | 33.26 |
| AT5G17200.1 | Thale cress | extracellular | 27.9 | 32.54 |
| AT5G27530.1 | Thale cress | cytosol | 29.74 | 31.88 |
| AT4G32370.1 | Thale cress | extracellular | 21.59 | 30.99 |
| AT4G32380.1 | Thale cress | extracellular | 25.05 | 27.15 |
| AT4G32375.1 | Thale cress | extracellular | 20.57 | 23.88 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:839443 | UniProt:A0A178W3E5 | ProteinID:AAG10640.1 | ProteinID:AEE27432.1 |
| ArrayExpress:AT1G02460 | EnsemblPlantsGene:AT1G02460 | RefSeq:AT1G02460 | TAIR:AT1G02460 | RefSeq:AT1G02460-TAIR-G | EnsemblPlants:AT1G02460.1 |
| TAIR:AT1G02460.1 | EMBL:BT023462 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0004650 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 |
| GO:GO:0005759 | GO:GO:0005975 | GO:GO:0006139 | GO:GO:0006397 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0019538 | GO:GO:0031124 | GO:GO:0043022 | GO:GO:0045727 |
| GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_563654.1 | ProteinID:OAP13020.1 | PFAM:PF00295 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009010 | PO:PO:0009029 |
| PO:PO:0009047 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF43 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| UniProt:Q9FWX5 | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI00000481A8 | SEG:seg |
Description
At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
Coordinates
chr1:-:504463..507268
Molecular Weight (calculated)
53465.7 Da
IEP (calculated)
6.450
GRAVY (calculated)
-0.380
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.