Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G44830.1 | Thale cress | extracellular | 76.73 | 90.36 |
| CDY50769 | Canola | extracellular | 65.98 | 75.44 |
| Bra025099.1-P | Field mustard | extracellular | 75.19 | 73.5 |
| CDY39404 | Canola | extracellular | 74.94 | 73.43 |
| CDY69377 | Canola | extracellular | 74.42 | 72.75 |
| CDY39399 | Canola | extracellular | 74.17 | 72.5 |
| Bra025103.1-P | Field mustard | extracellular | 73.66 | 72.0 |
| CDX73440 | Canola | extracellular | 72.89 | 71.25 |
| AT4G35670.1 | Thale cress | extracellular | 57.03 | 56.6 |
| AT5G27530.1 | Thale cress | cytosol | 53.71 | 45.85 |
| PGSC0003DMT400056828 | Potato | extracellular | 40.41 | 39.7 |
| AT5G17200.1 | Thale cress | extracellular | 42.2 | 39.19 |
| PGSC0003DMT400008955 | Potato | extracellular | 34.53 | 38.79 |
| AT3G15720.1 | Thale cress | extracellular | 45.01 | 38.6 |
| AT4G32370.1 | Thale cress | extracellular | 33.76 | 38.6 |
| TraesCS2D01G402100.1 | Wheat | extracellular | 39.9 | 38.52 |
| TraesCS2A01G405600.1 | Wheat | extracellular | 30.95 | 37.93 |
| TraesCS2B01G423400.1 | Wheat | plastid | 34.02 | 37.89 |
| TraesCS2B01G423300.1 | Wheat | extracellular | 38.62 | 37.66 |
| TraesCS2D01G402200.1 | Wheat | extracellular | 37.6 | 37.6 |
| TraesCS2A01G405300.1 | Wheat | extracellular, nucleus | 38.87 | 37.53 |
| GSMUA_Achr11P... | Banana | extracellular | 39.9 | 37.5 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 38.62 | 37.28 |
| TraesCS2D01G402300.1 | Wheat | extracellular | 31.46 | 36.94 |
| TraesCS2B01G423200.1 | Wheat | extracellular | 39.64 | 36.47 |
| AT5G39910.1 | Thale cress | extracellular | 34.78 | 36.46 |
| TraesCS2A01G405100.1 | Wheat | extracellular | 38.87 | 36.45 |
| KRH05150 | Soybean | extracellular | 25.06 | 36.43 |
| KXG26899 | Sorghum | extracellular | 38.62 | 35.95 |
| TraesCS2D01G402000.1 | Wheat | extracellular | 38.87 | 35.51 |
| AT1G80140.1 | Thale cress | extracellular | 29.92 | 34.82 |
| GSMUA_Achr9P22320_001 | Banana | extracellular | 36.06 | 34.14 |
| AT3G07970.1 | Thale cress | extracellular | 38.11 | 33.94 |
| GSMUA_Achr4P13200_001 | Banana | extracellular | 35.55 | 32.94 |
| Zm00001d039668_P001 | Maize | plastid | 36.57 | 32.72 |
| AT4G32380.1 | Thale cress | extracellular | 37.34 | 32.23 |
| AT5G14650.1 | Thale cress | extracellular | 35.55 | 31.95 |
| AT3G57510.1 | Thale cress | extracellular | 34.27 | 31.09 |
| AT1G80170.1 | Thale cress | extracellular | 35.29 | 31.08 |
| AT2G41850.1 | Thale cress | extracellular | 34.27 | 30.95 |
| AT4G32375.1 | Thale cress | extracellular | 32.23 | 29.79 |
| AT1G56710.1 | Thale cress | extracellular | 32.99 | 29.72 |
| AT1G23460.1 | Thale cress | extracellular | 34.53 | 29.35 |
| AT1G70500.1 | Thale cress | extracellular | 33.5 | 27.99 |
| AT3G26610.1 | Thale cress | extracellular | 32.99 | 27.45 |
| AT4G01890.1 | Thale cress | extracellular | 32.23 | 26.98 |
| AT1G02460.1 | Thale cress | extracellular | 33.5 | 26.68 |
| Os01t0172900-00 | Rice | nucleus | 19.69 | 26.1 |
| AT1G60590.1 | Thale cress | extracellular | 35.04 | 25.37 |
| AT1G48100.1 | Thale cress | extracellular | 30.69 | 25.26 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 34.02 | 25.0 |
| GSMUA_Achr4P06370_001 | Banana | extracellular | 37.85 | 19.63 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:834514 | ProteinID:AED95167.2 | ArrayExpress:AT5G44840 | EnsemblPlantsGene:AT5G44840 |
| RefSeq:AT5G44840 | TAIR:AT5G44840 | RefSeq:AT5G44840-TAIR-G | EnsemblPlants:AT5G44840.1 | TAIR:AT5G44840.1 | UniProt:F4KBP8 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 |
| GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_001318741.1 | PFAM:PF00295 |
| ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF42 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence |
| SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM | UniParc:UPI0008493221 | : | : |
Description
Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT5G44840]
Coordinates
chr5:-:18104769..18107140
Molecular Weight (calculated)
42604.0 Da
IEP (calculated)
8.200
GRAVY (calculated)
-0.144
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIILRGVFL LTLLHSILVN GQIYDVLEFG ADGNGITDDS KAFVKAWSAM CGSGGNSKTF IIPSNKTFLL QPLTFQGPCK SPSVQVKFDG KIVAPINKAA
101: WSDYKLFRWV SFKEIIGLTV NGSGTIHGRG SSFWKQGLPA SKRPTQLHFQ RCNDLMITGI TSFNSPKNHI SISECKRVKI TKIKLVAPHD SPNTDGINIS
201: ESSDVDIYDT VIGTGDDCVA INSGSMNINI ARMNCGPGHG ISVGSVGRDG EESIVENVQV TNCTFIRTDN GARIKTWPNG KGYAKNILFK SLTFRETKNP
301: IIIDQNYVDK GRLDVEESAV AISNVTFTDL RGTSKLDEII KIDCSKVTYC KDIVLDKIDI ATVDGNKPIV ECSNVYGKSI NANEANGCFK T
101: WSDYKLFRWV SFKEIIGLTV NGSGTIHGRG SSFWKQGLPA SKRPTQLHFQ RCNDLMITGI TSFNSPKNHI SISECKRVKI TKIKLVAPHD SPNTDGINIS
201: ESSDVDIYDT VIGTGDDCVA INSGSMNINI ARMNCGPGHG ISVGSVGRDG EESIVENVQV TNCTFIRTDN GARIKTWPNG KGYAKNILFK SLTFRETKNP
301: IIIDQNYVDK GRLDVEESAV AISNVTFTDL RGTSKLDEII KIDCSKVTYC KDIVLDKIDI ATVDGNKPIV ECSNVYGKSI NANEANGCFK T
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.