Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- mitochondrion 2
- extracellular 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G32380.1 | Thale cress | extracellular | 47.99 | 44.81 |
| AT4G32370.1 | Thale cress | extracellular | 33.57 | 41.52 |
| AT5G44830.1 | Thale cress | extracellular | 28.61 | 36.45 |
| AT4G35670.1 | Thale cress | extracellular | 33.33 | 35.79 |
| AT5G44840.1 | Thale cress | extracellular | 29.79 | 32.23 |
| AT1G80140.1 | Thale cress | extracellular | 25.06 | 31.55 |
| PGSC0003DMT400056828 | Potato | extracellular | 29.55 | 31.41 |
| PGSC0003DMT400008955 | Potato | extracellular | 23.88 | 29.02 |
| TraesCS2B01G423400.1 | Wheat | plastid | 23.64 | 28.49 |
| AT5G27530.1 | Thale cress | cytosol | 30.26 | 27.95 |
| AT5G17200.1 | Thale cress | extracellular | 26.95 | 27.08 |
| GSMUA_Achr4P13200_001 | Banana | extracellular | 26.71 | 26.78 |
| AT3G15720.1 | Thale cress | extracellular | 28.61 | 26.54 |
| GSMUA_Achr11P... | Banana | extracellular | 25.77 | 26.2 |
| AT5G39910.1 | Thale cress | extracellular | 22.46 | 25.47 |
| AT2G41850.1 | Thale cress | extracellular | 26.0 | 25.4 |
| AT3G57510.1 | Thale cress | extracellular | 25.77 | 25.29 |
| TraesCS2D01G402200.1 | Wheat | extracellular | 23.17 | 25.06 |
| TraesCS2A01G405100.1 | Wheat | extracellular | 24.59 | 24.94 |
| GSMUA_Achr9P22320_001 | Banana | extracellular | 23.88 | 24.46 |
| KXG26899 | Sorghum | extracellular | 23.88 | 24.05 |
| TraesCS2D01G402100.1 | Wheat | extracellular | 22.93 | 23.95 |
| HORVU2Hr1G096130.1 | Barley | extracellular | 22.93 | 23.95 |
| TraesCS2B01G423300.1 | Wheat | extracellular | 22.7 | 23.94 |
| TraesCS2D01G402000.1 | Wheat | extracellular | 24.11 | 23.83 |
| TraesCS2B01G423200.1 | Wheat | extracellular | 23.88 | 23.76 |
| AT1G70500.1 | Thale cress | extracellular | 26.24 | 23.72 |
| TraesCS2A01G405300.1 | Wheat | extracellular, nucleus | 22.7 | 23.7 |
| AT3G07970.1 | Thale cress | extracellular | 24.11 | 23.23 |
| AT1G23460.1 | Thale cress | extracellular | 24.59 | 22.61 |
| AT1G56710.1 | Thale cress | extracellular | 23.17 | 22.58 |
| AT5G14650.1 | Thale cress | extracellular | 23.17 | 22.53 |
| AT1G80170.1 | Thale cress | extracellular | 23.4 | 22.3 |
| Zm00001d039668_P001 | Maize | plastid | 22.7 | 21.97 |
| TraesCS2D01G402300.1 | Wheat | extracellular | 17.26 | 21.92 |
| TraesCS2A01G405600.1 | Wheat | extracellular | 16.31 | 21.63 |
| AT4G01890.1 | Thale cress | extracellular | 23.88 | 21.63 |
| AT3G26610.1 | Thale cress | extracellular | 23.64 | 21.28 |
| AT1G48100.1 | Thale cress | extracellular | 23.4 | 20.84 |
| AT1G02460.1 | Thale cress | extracellular | 23.88 | 20.57 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 22.46 | 17.86 |
| AT1G60590.1 | Thale cress | extracellular | 22.46 | 17.59 |
| GSMUA_Achr4P06370_001 | Banana | extracellular | 25.06 | 14.06 |
| Os01t0172900-00 | Rice | nucleus | 9.46 | 13.56 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:829372 | ProteinID:AEE86048.2 | ArrayExpress:AT4G32375 | EnsemblPlantsGene:AT4G32375 |
| RefSeq:AT4G32375 | TAIR:AT4G32375 | RefSeq:AT4G32375-TAIR-G | EnsemblPlants:AT4G32375.1 | TAIR:AT4G32375.1 | Unigene:At.54578 |
| UniProt:F4JUA4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0016798 | GO:GO:0016829 | GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_001320112.1 |
| PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31736 | PANTHER:PTHR31736:SF10 | InterPro:PbH1 | InterPro:Pectin_lyas_fold |
| InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | UniParc:UPI0008491FD9 | SEG:seg | : |
Description
Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G32375]
Coordinates
chr4:+:15629115..15631690
Molecular Weight (calculated)
46361.9 Da
IEP (calculated)
8.527
GRAVY (calculated)
-0.297
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MVREWGNYES KCWLCFTNVK GLVLNGSGIL HPHGEAWWSS IEHSHRPRTI GFSGSSNILY NGLTQMNSPK NHISILDCTN VTLSNFHLIA PKDSPNTDGI
101: DIAHSNNIRI FNSSIQTGDD CIAINGGSYD INITHVACGP GHGISIGSLG RYSVNDTVQN VKIRHCSFNG TENGARIKTW TGGLGVAKNI LYENITLTDT
201: KYPIIIDQHY CNGGHNCTKE AMTAVKVSNV TFRYFTGTCA NDIAIKLDCD EVTGCKDIVM EHINITSSST KRPLTAYCQF ADIISHFVSM KIKCDYYEEP
301: LVPVEPPQQV EPPTPTKPLA PAKPPRHVGP LMPTKPPTMF PKPLAPAKSP RHVELPMPTK PPTMFPKPLA PAKPPRHVEP PMPTKPPTMF PKPLAPAKPP
401: VYYAKPPAPN AQPSMLSFLS CLI
101: DIAHSNNIRI FNSSIQTGDD CIAINGGSYD INITHVACGP GHGISIGSLG RYSVNDTVQN VKIRHCSFNG TENGARIKTW TGGLGVAKNI LYENITLTDT
201: KYPIIIDQHY CNGGHNCTKE AMTAVKVSNV TFRYFTGTCA NDIAIKLDCD EVTGCKDIVM EHINITSSST KRPLTAYCQF ADIISHFVSM KIKCDYYEEP
301: LVPVEPPQQV EPPTPTKPLA PAKPPRHVGP LMPTKPPTMF PKPLAPAKSP RHVELPMPTK PPTMFPKPLA PAKPPRHVEP PMPTKPPTMF PKPLAPAKPP
401: VYYAKPPAPN AQPSMLSFLS CLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.