Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 4
- golgi 4
- extracellular 7
- vacuole 3
- plasma membrane 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43307 | Canola | extracellular | 90.74 | 91.12 |
| Bra018707.1-P | Field mustard | extracellular | 90.53 | 91.1 |
| CDX93644 | Canola | extracellular | 90.53 | 91.1 |
| KRH36916 | Soybean | extracellular, nucleus | 72.63 | 72.78 |
| KRH11881 | Soybean | extracellular | 73.26 | 72.65 |
| VIT_05s0020g00420.t01 | Wine grape | extracellular | 72.21 | 71.91 |
| KRH42407 | Soybean | extracellular | 69.47 | 68.18 |
| Os05t0279900-00 | Rice | cytosol | 44.84 | 67.62 |
| KRH58524 | Soybean | extracellular | 69.47 | 67.35 |
| GSMUA_Achr8P06220_001 | Banana | extracellular | 65.26 | 66.24 |
| Solyc04g008230.2.1 | Tomato | nucleus | 67.58 | 65.51 |
| PGSC0003DMT400075723 | Potato | extracellular | 66.95 | 65.43 |
| GSMUA_Achr8P22240_001 | Banana | extracellular | 62.11 | 61.84 |
| TraesCS7B01G230600.1 | Wheat | extracellular | 60.63 | 59.14 |
| TraesCS7A01G330000.1 | Wheat | extracellular | 60.42 | 58.81 |
| TraesCS7D01G326800.1 | Wheat | extracellular | 60.42 | 58.81 |
| HORVU7Hr1G078960.2 | Barley | extracellular | 60.21 | 58.49 |
| AT1G56710.1 | Thale cress | extracellular | 48.84 | 53.46 |
| Zm00001d040725_P002 | Maize | extracellular, vacuole | 54.74 | 51.79 |
| AT1G02460.1 | Thale cress | extracellular | 52.84 | 51.12 |
| KXG32428 | Sorghum | mitochondrion | 54.74 | 50.0 |
| AT4G01890.1 | Thale cress | extracellular | 48.84 | 49.68 |
| AT5G14650.1 | Thale cress | extracellular | 40.21 | 43.91 |
| AT3G26610.1 | Thale cress | extracellular | 39.16 | 39.57 |
| AT1G10640.1 | Thale cress | extracellular, golgi | 43.58 | 38.91 |
| KXG32426 | Sorghum | extracellular | 54.95 | 37.72 |
| AT3G57510.1 | Thale cress | extracellular | 34.11 | 37.59 |
| AT1G60590.1 | Thale cress | extracellular | 42.32 | 37.22 |
| AT1G80140.1 | Thale cress | extracellular | 25.68 | 36.31 |
| AT1G80170.1 | Thale cress | extracellular | 33.89 | 36.26 |
| AT2G41850.1 | Thale cress | extracellular | 32.84 | 36.03 |
| AT1G23460.1 | Thale cress | extracellular | 33.68 | 34.78 |
| Os01t0329300-01 | Rice | plastid | 55.16 | 34.52 |
| AT3G07970.1 | Thale cress | extracellular | 31.58 | 34.17 |
| AT1G70500.1 | Thale cress | extracellular | 33.47 | 33.97 |
| Zm00001d009167_P001 | Maize | extracellular | 54.74 | 33.94 |
| AT4G35670.1 | Thale cress | extracellular | 25.89 | 31.22 |
| AT3G15720.1 | Thale cress | extracellular | 29.89 | 31.14 |
| AT5G17200.1 | Thale cress | extracellular | 27.58 | 31.12 |
| AT5G44830.1 | Thale cress | extracellular | 21.68 | 31.02 |
| AT5G39910.1 | Thale cress | extracellular | 24.21 | 30.83 |
| AT4G32370.1 | Thale cress | extracellular | 22.11 | 30.7 |
| AT5G44840.1 | Thale cress | extracellular | 25.26 | 30.69 |
| AT5G27530.1 | Thale cress | cytosol | 27.58 | 28.6 |
| AT4G32380.1 | Thale cress | extracellular | 24.21 | 25.39 |
| AT4G32375.1 | Thale cress | extracellular | 20.84 | 23.4 |
Protein Annotations
| Gene3D:2.160.20.10 | MapMan:50.3.2 | EntrezGene:841228 | ProteinID:AAF79535.1 | ProteinID:AEE32248.1 | EMBL:AF410319 |
| ArrayExpress:AT1G48100 | EnsemblPlantsGene:AT1G48100 | RefSeq:AT1G48100 | TAIR:AT1G48100 | RefSeq:AT1G48100-TAIR-G | EnsemblPlants:AT1G48100.1 |
| TAIR:AT1G48100.1 | EMBL:AY050798 | EMBL:AY096360 | Unigene:At.70184 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005623 | GO:GO:0005975 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009831 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0030312 | GO:GO:0040007 |
| GO:GO:0071555 | InterPro:Glyco_hydro_28 | InterPro:IPR012334 | RefSeq:NP_175244.1 | PFAM:PF00295 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00502 |
| PANTHER:PTHR31375 | PANTHER:PTHR31375:SF26 | InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | UniProt:Q949Z1 |
| SMART:SM00710 | SUPFAM:SSF51126 | TMHMM:TMhelix | UniParc:UPI0000048354 | SEG:seg | : |
Description
Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
Coordinates
chr1:+:17766738..17769951
Molecular Weight (calculated)
51355.3 Da
IEP (calculated)
4.583
GRAVY (calculated)
-0.252
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.