Factsheet for GSMUA_Achr8P06220_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 9
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P22240_001	Banana	extracellular	73.5	72.12
VIT_05s0020g00420.t01	Wine grape	extracellular	73.29	71.91
KRH36916	Soybean	extracellular, nucleus	67.31	66.46
KRH11881	Soybean	extracellular	67.52	65.97
CDY43307	Canola	extracellular	66.67	65.96
Bra018707.1-P	Field mustard	extracellular	66.24	65.68
CDX93644	Canola	extracellular	66.24	65.68
PGSC0003DMT400075723	Potato	extracellular	68.16	65.64
AT1G48100.1	Thale cress	extracellular	66.24	65.26
Solyc04g008230.2.1	Tomato	nucleus	68.16	65.1
KRH42407	Soybean	extracellular	66.24	64.05
KRH58524	Soybean	extracellular	66.45	63.47
GSMUA_Achr11P...	Banana	extracellular	54.06	58.03
Zm00001d040725_P002	Maize	extracellular, vacuole	59.62	55.58
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	59.4	55.49
KXG32428	Sorghum	mitochondrion	60.04	54.04
GSMUA_Achr3P08400_001	Banana	extracellular	57.69	48.04
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	39.1	47.91
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	36.75	43.32
KXG32426	Sorghum	extracellular	61.97	41.91
GSMUA_Achr5P09080_001	Banana	extracellular	43.59	41.89
GSMUA_Achr4P02960_001	Banana	extracellular	42.31	41.68
GSMUA_Achr6P22080_001	Banana	extracellular	43.16	41.65
GSMUA_Achr1P12720_001	Banana	extracellular	36.11	41.22
GSMUA_Achr2P14330_001	Banana	extracellular	38.46	39.65
GSMUA_Achr1P27280_001	Banana	extracellular	42.73	39.22
GSMUA_AchrUn_...	Banana	extracellular	23.93	38.89
Zm00001d009167_P001	Maize	extracellular	62.61	38.25
Os01t0329300-01	Rice	plastid	61.54	37.94
GSMUA_Achr7P01870_001	Banana	cytosol	34.19	36.36
GSMUA_Achr1P22940_001	Banana	extracellular	33.97	36.05
GSMUA_Achr3P13670_001	Banana	extracellular	34.83	35.82
GSMUA_Achr11P...	Banana	extracellular	31.84	35.82
GSMUA_Achr4P13200_001	Banana	extracellular	32.27	35.78
GSMUA_AchrUn_...	Banana	mitochondrion	30.56	35.14
GSMUA_Achr9P22320_001	Banana	extracellular	30.56	34.62
GSMUA_Achr4P22100_001	Banana	extracellular	33.55	33.84
GSMUA_Achr4P06370_001	Banana	extracellular	32.91	20.42

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr8G06220_001	EnsemblPlants:GSMUA_Achr8P06220_001	EnsemblPlants:GSMUA_Achr8T06220_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0TN25	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF26	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI00029547FD	SEG:seg	:	:	:

Description

Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr8G06220_001]

Coordinates

chr8:+:4045550..4047347

Molecular Weight (calculated)

50130.1 Da

IEP (calculated)

4.974

GRAVY (calculated)

-0.151

Length

468 amino acids

Sequence
(BLAST)

001: MAIGHLSLSM SITVAVLLLG LPNSDGRSHY HKHKNSHKDH GGNQISVPPE TAPAEPPGSS NDGGDNSSSE PCVFDVRSFG ALGDGSSDDT QAFRAAWKAA
101: CAAESSVLLV PSDGVFMITS TIFSGPCKPG FVLQIDGVLM PPDGPDCWPA SDSKKQWLVF YRVDGMTLKG EGTIEGNGEE WWNLPCKPHR GPKGSTLPGP
201: CDSPALIRFF MSYNLTVRGL RVENSPQFHV KFDGCEGVHI EDLSIRSPAL SPNTDGIHIE NTKSVAIYNS VISNGDDCIS IGPGCSNVDI ANVTCGPSHG
301: ISIGSLGVHN SQACVSNITV RNARIRNSDN GVRIKTWQGG TGSVSGISFD NIYMENVRNC IIIDQYYCLT KQCLNQTSAV WVTDVAYANI KGTYDVRSPP
401: IHFACSDAVA CTNITLSDVE LLPYEGVLVD DPFCWNAYGI MQTLTIPPMS CLQEGQPQSL QENPVLGC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.