Factsheet for GSMUA_Achr4P22100_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P01870_001	Banana	cytosol	73.49	77.5
CDY04708	Canola	plastid	37.93	63.54
Solyc09g098270.2.1	Tomato	cytosol	55.39	59.35
Solyc04g025440.2.1	Tomato	extracellular	57.97	58.48
PGSC0003DMT400080722	Potato	extracellular	57.76	58.26
Bra024602.1-P	Field mustard	cytosol	55.39	58.14
AT1G23460.1	Thale cress	extracellular	57.54	58.04
PGSC0003DMT400055713	Potato	extracellular	56.68	57.42
CDY54292	Canola	cytosol	55.17	57.4
Bra012375.1-P	Field mustard	cytosol	55.17	57.4
CDY25786	Canola	cytosol	54.96	57.17
Bra016345.1-P	Field mustard	extracellular	56.25	55.77
CDY11585	Canola	extracellular	55.39	55.03
CDY47139	Canola	extracellular	55.39	55.03
Bra016213.1-P	Field mustard	extracellular	55.39	55.03
AT1G70500.1	Thale cress	extracellular	54.74	54.27
CDY44150	Canola	extracellular, golgi, plastid	56.68	52.39
Zm00001d015129_P001	Maize	mitochondrion	53.66	48.26
EES04449	Sorghum	extracellular	53.02	47.31
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	53.66	47.16
CDY41445	Canola	endoplasmic reticulum	56.47	47.12
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	53.02	46.86
HORVU6Hr1G015390.2	Barley	extracellular, golgi	53.23	46.78
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	53.23	46.78
Os02t0130200-01	Rice	extracellular, golgi	51.08	46.65
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	36.85	43.07
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	34.91	42.41
GSMUA_Achr3P13670_001	Banana	extracellular	39.22	40.0
GSMUA_Achr1P22940_001	Banana	extracellular	37.5	39.46
GSMUA_Achr11P...	Banana	extracellular	37.07	39.45
GSMUA_AchrUn_...	Banana	extracellular	24.35	39.24
GSMUA_Achr11P...	Banana	extracellular	33.84	37.74
GSMUA_Achr2P14330_001	Banana	extracellular	35.34	36.12
GSMUA_Achr9P22320_001	Banana	extracellular	30.6	34.38
GSMUA_Achr8P22240_001	Banana	extracellular	35.34	34.38
GSMUA_Achr6P22080_001	Banana	extracellular	35.78	34.23
GSMUA_Achr4P13200_001	Banana	extracellular	31.03	34.12
GSMUA_Achr1P12720_001	Banana	extracellular	29.96	33.9
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	36.42	33.73
GSMUA_AchrUn_...	Banana	mitochondrion	29.53	33.66
GSMUA_Achr8P06220_001	Banana	extracellular	33.84	33.55
GSMUA_Achr5P09080_001	Banana	extracellular	34.91	33.26
GSMUA_Achr4P02960_001	Banana	extracellular	33.62	32.84
GSMUA_Achr1P27280_001	Banana	extracellular	34.7	31.57
GSMUA_Achr3P08400_001	Banana	extracellular	36.85	30.43
KRG99363	Soybean	extracellular	55.82	29.4
GSMUA_Achr4P06370_001	Banana	extracellular	32.76	20.16

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr4G22100_001	EnsemblPlants:GSMUA_Achr4P22100_001
EnsemblPlants:GSMUA_Achr4T22100_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0SR23	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	UniParc:UPI0002962A59	SEG:seg	:	:	:

Description

Putative Probable polygalacturonase At1g80170 [Source:GMGC_GENE;Acc:GSMUA_Achr4G22100_001]

Coordinates

chr4:+:22458849..22463757

Molecular Weight (calculated)

50344.9 Da

IEP (calculated)

7.929

GRAVY (calculated)

-0.214

Length

464 amino acids

Sequence
(BLAST)

001: MGRTLGFFSI LVLLILIISA SSSDDQRFTT DKIHFWFNGD GEQEQERAGG LSDEADSILM LERGGVARVP VNVHSFGAVG DGVADDTMAF RNAWYKACSL
101: KNAVLLVPER HRYKVNATNF RGPCQRHLIV QVKGTIVAPD DPKDWDPKYP STWLSFSNLN GVRFQGGGVI DGSGSKWWAA SCKIDRTNPC KEAPTALTID
201: SSTKIRVKGL TIQFAQQMHF VIYRSDVVRV SGVRILAPKD SPNTDGIHIG ESTDVAIQNC HIGTGDDCVS IVNASSNIKM KKIMCGPGHG ISIGSLGKDK
301: STGIVTGVVL DTATISGTKN GLRIKTWQGG SGYVKSVRFE NVKMNDVENP IIIDQFYCDS PATCKNQTSA VKISQVIFRN INGTSRTPHA MKFACSDTVP
401: CSNIVLNNIN LETENGTAKT FCNCAMGFHY GIVQPTADCL KSSSCGGIQE DAQRQTHDPT HTEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.