Factsheet for Zm00001d015129_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04449	Sorghum	extracellular	84.69	84.04
Os02t0130200-01	Rice	extracellular, golgi	68.41	69.49
TraesCS6A01G084500.1	Wheat	extracellular, golgi, vacuole	62.79	61.71
HORVU6Hr1G015390.2	Barley	extracellular, golgi	62.6	61.17
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	62.4	60.98
TraesCSU01G113500.1	Wheat	extracellular, golgi, vacuole	62.21	60.8
GSMUA_Achr7P01870_001	Banana	cytosol	47.67	55.91
GSMUA_Achr4P22100_001	Banana	extracellular	48.26	53.66
Bra012375.1-P	Field mustard	cytosol	45.35	52.47
Solyc09g098270.2.1	Tomato	cytosol	43.8	52.19
Bra024602.1-P	Field mustard	cytosol	44.57	52.04
CDY25786	Canola	cytosol	44.96	52.02
CDY54292	Canola	cytosol	44.96	52.02
AT1G23460.1	Thale cress	extracellular	45.93	51.52
CDY04708	Canola	plastid	27.52	51.26
CDY11585	Canola	extracellular	46.32	51.18
CDY47139	Canola	extracellular	46.12	50.96
Bra016213.1-P	Field mustard	extracellular	46.12	50.96
AT1G70500.1	Thale cress	extracellular	45.74	50.43
Solyc04g025440.2.1	Tomato	extracellular	44.57	50.0
PGSC0003DMT400080722	Potato	extracellular	44.57	50.0
PGSC0003DMT400055713	Potato	extracellular	44.19	49.78
Bra016345.1-P	Field mustard	extracellular	44.77	49.36
CDY44150	Canola	extracellular, golgi, plastid	46.12	47.41
Zm00001d038874_P002	Maize	extracellular	35.08	43.93
CDY41445	Canola	endoplasmic reticulum	45.16	41.91
Zm00001d034552_P001	Maize	extracellular	32.56	38.1
Zm00001d034551_P001	Maize	extracellular	31.98	37.84
Zm00001d048079_P001	Maize	extracellular	33.72	37.66
Zm00001d034559_P001	Maize	extracellular	34.5	37.47
Zm00001d045974_P001	Maize	extracellular	30.43	37.47
Zm00001d011156_P001	Maize	plastid	31.4	37.16
Zm00001d013032_P001	Maize	extracellular	34.5	36.55
Zm00001d040589_P001	Maize	extracellular	33.91	35.07
Zm00001d039668_P001	Maize	plastid	29.26	34.55
Zm00001d038875_P001	Maize	extracellular	31.4	34.39
Zm00001d009057_P001	Maize	extracellular	28.1	34.28
Zm00001d040725_P002	Maize	extracellular, vacuole	32.75	33.67
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	31.98	31.98
Zm00001d044110_P001	Maize	extracellular	33.53	31.92
Zm00001d011444_P002	Maize	extracellular	33.33	31.79
KRG99363	Soybean	extracellular	47.09	27.58
Zm00001d009167_P001	Maize	extracellular	32.56	21.93

Protein Annotations

EntrezGene:103626566	Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6GZG2	ProteinID:AQK68130.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0016798	GO:GO:0016829	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF29	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000220E035	EnsemblPlantsGene:Zm00001d015129	EnsemblPlants:Zm00001d015129_P001	EnsemblPlants:Zm00001d015129_T001	SEG:seg	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr5:-:76648261..76651007

Molecular Weight (calculated)

54606.5 Da

IEP (calculated)

4.789

GRAVY (calculated)

-0.303

Length

516 amino acids

Sequence
(BLAST)

001: MGAAPAARRC ALLLALVVLV AAAGERGGSG AGGEAGAEQV LRLWSSADSA RGGEAVDEED RFFRWEWEEE EEDDDNNDEE EGEEEDDHAV VVQRKGACRN
101: VVNVDSFGAA GDGVADDTQA FASAWKTACS LDNAVFLVPA GRRYKVGAIQ FVGPCKDRRM IIQIQGTVVA PEEPSEWDPR SPRLWLLFSG LAGARIQGGG
201: VIDGSGSKWW ASSCKINRSN PCRPAPTAVT IDSCRGVRVR GLRVQNAQQM HVTVSRSRGV RVAGLRIDAP EDSPNTDGIH VAESTAVTIQ SCRIGTGDDC
301: ISIVNGSFGV KMRDIDCGPG HGISIGSLGK GGAFAAVADV ALDRARISRA QNGVRIKTWQ GGAGYVRGVR FADVAVDGVD HPIVIDQFYC DVTRRQRDGG
401: GGGACANQTS AVAVSDVSYR NISGTSRRAE AIRFACSDAV PCTGIVLSNI NLRRADDDGE VQTVCNCAVG LDYGRVQPAA DCLRSSTCGG TPDGHHHHDD
501: DDEEQGKDDA VLHTEL

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.