Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d034551_P001 | Maize | extracellular | 92.97 | 94.04 |
| EER90686 | Sorghum | plastid | 76.19 | 77.06 |
| Zm00001d034559_P001 | Maize | extracellular | 73.47 | 68.21 |
| TraesCS5B01G468700.1 | Wheat | extracellular | 62.81 | 67.56 |
| TraesCS5D01G470100.1 | Wheat | extracellular | 61.9 | 66.59 |
| TraesCS5B01G469000.1 | Wheat | extracellular | 61.22 | 66.5 |
| TraesCS5B01G468900.1 | Wheat | extracellular | 63.04 | 66.35 |
| TraesCS5D01G470200.1 | Wheat | extracellular | 63.04 | 66.35 |
| TraesCS5A01G459000.1 | Wheat | extracellular | 61.0 | 65.77 |
| TraesCS5A01G459100.1 | Wheat | extracellular | 61.68 | 65.38 |
| HORVU5Hr1G109970.1 | Barley | extracellular | 61.0 | 64.82 |
| Zm00001d013032_P001 | Maize | extracellular | 69.61 | 63.04 |
| HORVU5Hr1G109980.2 | Barley | extracellular, plastid | 61.22 | 60.13 |
| Os03t0808000-00 | Rice | extracellular | 62.36 | 59.52 |
| Zm00001d038874_P002 | Maize | extracellular | 36.73 | 39.32 |
| Zm00001d048079_P001 | Maize | extracellular | 39.68 | 37.88 |
| Zm00001d039668_P001 | Maize | plastid | 34.24 | 34.55 |
| Zm00001d009057_P001 | Maize | extracellular | 31.97 | 33.33 |
| Zm00001d011156_P001 | Maize | plastid | 32.2 | 32.57 |
| Zm00001d015129_P001 | Maize | mitochondrion | 38.1 | 32.56 |
| Zm00001d040589_P001 | Maize | extracellular | 36.73 | 32.46 |
| Zm00001d045974_P001 | Maize | extracellular | 30.39 | 31.98 |
| Zm00001d038875_P001 | Maize | extracellular | 33.11 | 31.0 |
| Zm00001d040725_P002 | Maize | extracellular, vacuole | 35.15 | 30.88 |
| Zm00001d009667_P001 | Maize | extracellular, mitochondrion, plastid | 34.69 | 29.65 |
| Zm00001d011444_P002 | Maize | extracellular | 36.28 | 29.57 |
| Zm00001d044110_P001 | Maize | extracellular | 35.83 | 29.15 |
| Zm00001d009167_P001 | Maize | extracellular | 35.15 | 20.23 |
Protein Annotations
| EntrezGene:103644218 | Gene3D:2.160.20.10 | MapMan:21.3.5.1.1 | UniProt:A0A1D6L8J2 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 | InterPro:Glyco_hydro_28 |
| InterPro:IPR012334 | ProteinID:ONM10554.1 | PFAM:PF00295 | ScanProsite:PS00502 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF98 |
| InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
| UniParc:UPI000220C253 | EnsemblPlantsGene:Zm00001d034552 | EnsemblPlants:Zm00001d034552_P001 | EnsemblPlants:Zm00001d034552_T001 | : | : |
Description
Polygalacturonase QRT2
Coordinates
chr1:+:296067356..296069221
Molecular Weight (calculated)
47301.2 Da
IEP (calculated)
8.212
GRAVY (calculated)
-0.337
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSSGMKLV YMAPLLPLLF MSGVLEAAGA GSSADGTNGN LHGSVTSRPA AAPRGRSLPE SQSVFSLDRY GARGDGRNDD TRALEMAWKA ACASPRPAVV
101: LVPAGRRYLL KLLTLRGPCK SSVTLTVKGT LVASPNRADW SDSDRRHWIV FRSIDELTVN GGGAIDGNGE KWWPHSCKIN KALPCKEAPT ALSFHYCVGL
201: KVEDLKIMNS QQIHMSVEDS ANVLLARLSI TAPGTSPNTD GIHITRSKDV RVTDCKIKTG DDCMSIENGT HNLHVSKVTC GPGHGISIGS LGDDNSRAEV
301: SGITIDSVQL HGTTNGARIK TYQGGSGYAK DITFQNMVMY DVKNPIIIDQ NYCDRAKPCG EQESAVQVSG VVFKNIRGTT STKDAIKMNC SENVPCQGIT
401: LQNIDLEMQD GKGSTRSTCR NAKWREFGTV HPQPCTATDT E
101: LVPAGRRYLL KLLTLRGPCK SSVTLTVKGT LVASPNRADW SDSDRRHWIV FRSIDELTVN GGGAIDGNGE KWWPHSCKIN KALPCKEAPT ALSFHYCVGL
201: KVEDLKIMNS QQIHMSVEDS ANVLLARLSI TAPGTSPNTD GIHITRSKDV RVTDCKIKTG DDCMSIENGT HNLHVSKVTC GPGHGISIGS LGDDNSRAEV
301: SGITIDSVQL HGTTNGARIK TYQGGSGYAK DITFQNMVMY DVKNPIIIDQ NYCDRAKPCG EQESAVQVSG VVFKNIRGTT STKDAIKMNC SENVPCQGIT
401: LQNIDLEMQD GKGSTRSTCR NAKWREFGTV HPQPCTATDT E
001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S
Arabidopsis Description
ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.