CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
vacuole 1
extracellular 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034551_P001	Maize	extracellular	77.06	77.06
Zm00001d034552_P001	Maize	extracellular	77.06	76.19
EER90681	Sorghum	extracellular	78.21	73.02
EER93240	Sorghum	extracellular	70.87	68.36
TraesCS5D01G470100.1	Wheat	extracellular	63.3	67.32
TraesCS5B01G468700.1	Wheat	extracellular	63.07	67.07
TraesCS5D01G470200.1	Wheat	extracellular	63.99	66.59
TraesCS5B01G468900.1	Wheat	extracellular	63.99	66.59
TraesCS5A01G459100.1	Wheat	extracellular	63.53	66.59
HORVU5Hr1G109970.1	Barley	extracellular	63.3	66.51
TraesCS5A01G459000.1	Wheat	extracellular	61.93	66.01
TraesCS5B01G469000.1	Wheat	extracellular	61.01	65.52
HORVU5Hr1G109980.2	Barley	extracellular, plastid	63.3	61.47
Os03t0808000-00	Rice	extracellular	61.93	58.44
KXG39856	Sorghum	extracellular	41.28	41.86
EES18597	Sorghum	extracellular	37.84	40.44
KXG26899	Sorghum	extracellular	35.32	36.67
KXG31745	Sorghum	extracellular	32.57	32.95
EES04449	Sorghum	extracellular	38.3	32.12
EES00620	Sorghum	extracellular	36.93	31.82
KXG32718	Sorghum	extracellular	31.42	31.42
EES20001	Sorghum	extracellular	36.93	29.98
KXG32428	Sorghum	mitochondrion	35.55	29.81
KXG22449	Sorghum	extracellular, golgi	31.65	29.49
EES01142	Sorghum	extracellular	35.78	29.32
KXG32426	Sorghum	extracellular	35.55	22.4

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EntrezGene:8081203	UniProt:C5WW45	EnsemblPlants:EER90686	ProteinID:EER90686
ProteinID:EER90686.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF98	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
EnsemblPlantsGene:SORBI_3001G045900	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0001A8207E	RefSeq:XP_002463688.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:3396428..3397928

Molecular Weight (calculated)

46754.1 Da

IEP (calculated)

10.054

GRAVY (calculated)

-0.298

Length

436 amino acids

Sequence
(BLAST)

001: MASLLALLLV SGASNGTSSD GTSYLRSSGA SGPAAAPRSS SRSLAMAMAM AMASSSHHQS VFSLDSYGAR GDGRHDDTPA LEKAWEAACA SPRPAVVLVP
101: NGGRYLLKLV TLRGPCKSSV TLTVKGTLVA SPDRADWSDK DRRHWIVFRR VNKLTVNGGG TIDGNGQKWW PHSCKINKTL PCKVAPTALS FHHCTNLRVD
201: NLKIMNGQQM HMSVEDCTDV VLARLSITAP ARSPNTDGIH ITRSKNVRVT NCKIKTGDDC MSIENGTHNL HVSKVVCGPG HGISIGSLGD DNSRAEVSGI
301: TIDSVQLYGT TNGARIKTYQ GGSGYAKDIT FQNMIMYGVK NPIIIDQNYC DKATPCAEQR SAVRVSNVVF KNIRGTTITK HAIKMNCSKN VPCQGITLKN
401: IDMKLKGGKG NIDSTCQNAK WRKSGFVHPQ PCIATK

Best Arabidopsis Sequence Match ( AT3G57510.1 )
(BLAST)

001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S

Arabidopsis Description

ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.