CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011156_P001	Maize	plastid	87.84	87.84
Os01t0549000-00	Rice	extracellular	52.52	80.63
GSMUA_Achr1P12720_001	Banana	extracellular	53.44	56.83
KRH74551	Soybean	extracellular	53.44	50.54
KRH69612	Soybean	extracellular	53.44	50.43
VIT_01s0127g00120.t01	Wine grape	extracellular	54.13	49.27
AT3G26610.1	Thale cress	extracellular	50.23	46.6
Bra025216.1-P	Field mustard	extracellular	49.54	45.96
CDX83631	Canola	extracellular	49.54	45.86
CDY13645	Canola	extracellular	49.31	45.74
Solyc05g005040.2.1	Tomato	extracellular	48.62	45.01
PGSC0003DMT400035101	Potato	extracellular, golgi	49.08	44.49
EES01142	Sorghum	extracellular	43.35	35.53
EES20001	Sorghum	extracellular	43.12	35.01
EES18597	Sorghum	extracellular	32.34	34.56
EES00620	Sorghum	extracellular	38.76	33.4
KXG32428	Sorghum	mitochondrion	38.99	32.69
KXG39856	Sorghum	extracellular	32.11	32.56
EER93240	Sorghum	extracellular	33.03	31.86
EER90686	Sorghum	plastid	31.42	31.42
KXG26899	Sorghum	extracellular	30.05	31.19
EER90681	Sorghum	extracellular	33.03	30.84
EES04449	Sorghum	extracellular	35.32	29.62
KXG31745	Sorghum	extracellular	28.9	29.23
KXG22449	Sorghum	extracellular, golgi	28.44	26.5
KXG32426	Sorghum	extracellular	40.6	25.58

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	UniProt:A0A1B6Q458	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0016043	GO:GO:0016049
GO:GO:0016787	GO:GO:0016798	GO:GO:0040007	GO:GO:0045490	GO:GO:0048046	GO:GO:0052546
GO:GO:0060773	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlants:KXG32718	ProteinID:KXG32718
ProteinID:KXG32718.1	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF92	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	EnsemblPlantsGene:SORBI_3003G187700	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0003C6CCCD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:50667570..50669806

Molecular Weight (calculated)

45843.8 Da

IEP (calculated)

9.034

GRAVY (calculated)

0.046

Length

436 amino acids

Sequence
(BLAST)

001: MRSSVASAAL LAGALLCLLA SPARSTGRTT LSVLSFGAAA DGVTDDAEAL VAAWRVACRV PRATVLLPSG HRFLLSPVTL QGPCSTKLTL QIDGTVLAPP
101: EMGSWPKPRR PLQWLNFKWL QDFSILGAGT VDGQSITSLQ SASSPANNST SQTSTGHWHS PGVKPTLIRF YNSFNVTVRN IRITNSPQCH LKFDSSGGIK
201: VKNITISSPG DSPNTDGIHL QNTRDVEIKS STIGCGDDCV SIQTGCSNVH IKNVVCNPGH GISLGGLGKD YSLACVSDVV AENIIVQNAL YGVRIKTWQG
301: GVGSVRNITF SNVRVANVAT PIAIDQFYCD RGGARCANRT GAVAITGVAY RRVVGTYSFQ PVRLACSDAR PCTGVTMVDV RLSPAATAAG GGATVAPLCW
401: NSYGEARGTI QPLGVGCLQR SNGYAMPLTQ PFNYTC

Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)

001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.