Factsheet for Solyc05g005040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
vacuole 4
mitochondrion 1
extracellular 5
plasma membrane 4
golgi 3
endoplasmic reticulum 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035101	Potato	extracellular, golgi	92.99	91.06
VIT_01s0127g00120.t01	Wine grape	extracellular	70.28	69.1
KRH74551	Soybean	extracellular	62.0	63.34
KRH69612	Soybean	extracellular	60.93	62.12
AT3G26610.1	Thale cress	extracellular	58.39	58.51
Bra025216.1-P	Field mustard	extracellular	57.32	57.45
CDY13645	Canola	extracellular	57.11	57.23
CDX83631	Canola	extracellular	56.9	56.9
GSMUA_Achr1P12720_001	Banana	extracellular	48.62	55.85
Os01t0549000-00	Rice	extracellular	29.94	49.65
KXG32718	Sorghum	extracellular	45.01	48.62
Zm00001d011156_P001	Maize	plastid	43.95	47.48
Solyc07g015870.2.1	Tomato	extracellular	42.25	44.32
Solyc05g005170.2.1	Tomato	nucleus	45.44	42.13
Solyc08g060970.2.1	Tomato	nucleus	32.7	38.79
Solyc12g009420.1.1	Tomato	extracellular	32.91	38.08
Solyc04g008230.2.1	Tomato	nucleus	39.28	37.76
Solyc01g087280.1.1	Tomato	extracellular	33.76	37.41
Solyc01g100980.2.1	Tomato	extracellular	37.79	37.4
Solyc03g113230.1.1	Tomato	extracellular	32.48	37.23
Solyc01g079130.1.1	Tomato	extracellular	37.16	37.08
Solyc04g015530.1.1	Tomato	cytosol	30.57	36.73
Solyc06g068040.2.1	Tomato	nucleus	32.06	34.55
Solyc09g098270.2.1	Tomato	cytosol	31.63	34.41
Solyc04g025440.2.1	Tomato	extracellular	33.55	34.35
Solyc03g116500.2.1	Tomato	nucleus	32.91	34.29
Solyc03g116580.2.1	Tomato	extracellular	29.3	31.58
Solyc10g080210.1.1	Tomato	extracellular	29.94	30.85

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4BW35
PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF92	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g005040.2	EnsemblPlants:Solyc05g005040.2.1	TMHMM:TMhelix
UniParc:UPI0002766A56	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:58049..62049

Molecular Weight (calculated)

52071.5 Da

IEP (calculated)

8.972

GRAVY (calculated)

-0.236

Length

471 amino acids

Sequence
(BLAST)

001: MFQMKKNYRH TCFIFLLLIF ATTISVDARK HYHTKKSKIH HKHKKNNGGA PNCSSSPFPS HGFYPTNGSP IFNILSFGAK GDGVSDDTKA LETAWEAACK
101: VQGATLEIPS EFQFLINPIT LQGPCMPNFV FQIDGIILGP PKVGSWPKSS LFQWLNLKWM HNFTIQGTGT LDGQGYNWWK LSQIDFFQVM KKSKNIPDMK
201: PTVLRFYGSY NVTIRDVKII NSPQCHLKFD NSKGVKINNV TISAPESSPN TDGIHLQNTQ DVEIHHSNIG TGDDCISIQT GCSNIHVHHM NCGPGHGISL
301: GGLGKDKSIA CVSDIIVDNV NLQSTMYGAR IKTWQGGVGS VKNISFTNIQ VSNVKVPIMI DQYYCDKHVC KNQTGAVAIS NVQFNQIIGT YSTKPIHLAC
401: SNSIPCTDVD LIDIQLKPST NYRGINQLAG LCWNSYGKSQ APLLPSSMDY CVRRGSGFVR GISRSHEHVC L

Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)

001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.