Factsheet for Solyc01g087280.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017691	Potato	extracellular	78.12	94.59
VIT_13s0064g00760.t01	Wine grape	cytosol	41.88	53.61
Solyc04g015530.1.1	Tomato	cytosol	46.59	50.51
Bra029690.1-P	Field mustard	cytosol	45.65	47.78
KRH32949	Soybean	extracellular	48.71	47.26
KRH13966	Soybean	extracellular	48.24	46.7
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	43.53	46.6
CDY07963	Canola	extracellular	47.76	46.35
CDX74019	Canola	extracellular	47.29	46.0
Bra001279.1-P	Field mustard	extracellular	47.06	45.77
VIT_13s0064g00750.t01	Wine grape	cytosol	48.94	45.61
KRH23942	Soybean	extracellular	47.06	45.45
CDY35976	Canola	extracellular	44.71	45.13
CDY28005	Canola	extracellular	44.71	45.13
KRH39858	Soybean	extracellular	46.59	44.9
AT3G07970.1	Thale cress	extracellular	46.35	44.87
HORVU0Hr1G038940.1	Barley	cytosol	41.65	43.81
TraesCS4D01G243600.1	Wheat	extracellular	43.06	42.26
TraesCS4A01G066700.1	Wheat	extracellular	42.82	42.03
Solyc10g080210.1.1	Tomato	extracellular	45.18	42.01
TraesCS4B01G244300.1	Wheat	extracellular	42.59	41.8
GSMUA_Achr1P22940_001	Banana	extracellular	43.06	41.5
Os03t0216800-01	Rice	extracellular	42.12	40.87
KXG39856	Sorghum	extracellular	41.18	40.7
Solyc08g060970.2.1	Tomato	nucleus	36.24	38.79
Solyc06g068040.2.1	Tomato	nucleus	39.53	38.44
Solyc04g025440.2.1	Tomato	extracellular	41.41	38.26
Solyc03g113230.1.1	Tomato	extracellular	36.24	37.47
Zm00001d048079_P001	Maize	extracellular	40.71	37.45
Solyc09g098270.2.1	Tomato	cytosol	38.12	37.41
Solyc12g009420.1.1	Tomato	extracellular	35.76	37.35
Solyc03g116580.2.1	Tomato	extracellular	38.12	37.07
Solyc03g116500.2.1	Tomato	nucleus	38.82	36.5
Solyc05g005040.2.1	Tomato	extracellular	37.41	33.76
Solyc01g100980.2.1	Tomato	extracellular	36.94	32.98
Solyc04g008230.2.1	Tomato	nucleus	37.88	32.86
Solyc01g079130.1.1	Tomato	extracellular	35.06	31.57
Solyc05g005170.2.1	Tomato	nucleus	36.94	30.91
Solyc07g015870.2.1	Tomato	extracellular	32.47	30.73

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009791	GO:GO:0009901	GO:GO:0009908	GO:GO:0009987	GO:GO:0010047
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0030154	GO:GO:0045490	GO:GO:0048235
GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4AYB8	PFAM:PF00295	PFscan:PS51257
PANTHER:PTHR31375	PANTHER:PTHR31375:SF28	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710
SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g087280.1	EnsemblPlants:Solyc01g087280.1.1	UniParc:UPI000276317B	:

Description

Polygalacturonase QRT2 [Source:Projected from Arabidopsis thaliana (AT3G07970) UniProtKB/Swiss-Prot;Acc:Q9SFB7]

Coordinates

chr1:+:82215602..82219911

Molecular Weight (calculated)

47653.0 Da

IEP (calculated)

9.915

GRAVY (calculated)

-0.352

Length

425 amino acids

Sequence
(BLAST)

001: MLFRILFIVL LATSLFATSC NGKKKIEKPI KHGHVKKRTQ AIIDIQSFGA KGDGISDDTQ AFIKAWKKTC KTENGVLLIP RHKIYYIGPI KFHGPCKKGL
101: RMMINGELRA SKDISDYNED KRHWLLFQNM ENFIVEGVGS IDGNGQIWWK NSCKVDKTIP CNTKTLTVPT AMSFYNCTNL KVRNLGFKNP QKMHLTITKS
201: ELVEVSRLKI TAPYDSPNTD GIHVSGTKDI DIHHSYIETG DDCISIVNGS TNVRARYIHC GPGHGISIGS LGKNKEEDVV SNIYVHDATL RGTTNGLRIK
301: SWQGGRGYAK DILFQNIQMV NVTNPIIIDQ FYCDQDKPCK EQKEAVRVSN IMFKNIKGTS FTQTAIKLKC SKTVPCKGIQ MENVNIRHEG GLTVKALCTN
401: VKYTTKGVLF PKCPSEPHPL TFLRN

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.