Factsheet for Solyc04g015530.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400070039	Potato	cytosol	78.06	74.63
VIT_08s0007g08330.t01	Wine grape	extracellular	60.97	53.83
VIT_08s0007g07750.t01	Wine grape	extracellular	60.46	53.62
VIT_08s0007g07760.t01	Wine grape	extracellular	58.93	53.1
VIT_08s0007g07780.t01	Wine grape	extracellular	58.67	53.0
VIT_08s0007g07770.t01	Wine grape	extracellular	58.93	52.26
KRH71979	Soybean	extracellular	55.36	50.7
AT3G57510.1	Thale cress	extracellular	54.85	49.88
Solyc10g080210.1.1	Tomato	extracellular	57.65	49.45
CDX72025	Canola	extracellular	54.34	49.31
Bra003286.1-P	Field mustard	extracellular	54.34	49.19
CDX67693	Canola	extracellular	54.34	49.19
Bra007332.1-P	Field mustard	extracellular	53.83	48.84
AT2G41850.1	Thale cress	extracellular	53.83	48.73
CDX79907	Canola	extracellular	53.83	48.51
CDY48768	Canola	extracellular	53.83	48.51
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	48.98	48.36
Bra004655.1-P	Field mustard	extracellular	52.55	48.13
CDY14791	Canola	extracellular	52.81	47.81
Bra016911.1-P	Field mustard	extracellular	52.55	47.58
KRH66955	Soybean	extracellular	56.12	47.41
CDY06902	Canola	extracellular	52.3	47.34
Solyc01g087280.1.1	Tomato	extracellular	50.51	46.59
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	52.55	45.98
KRH33163	Soybean	extracellular, plastid	55.1	45.28
HORVU0Hr1G038940.1	Barley	cytosol	45.15	43.81
GSMUA_Achr1P22940_001	Banana	extracellular	47.96	42.63
TraesCS4D01G243600.1	Wheat	extracellular	45.92	41.57
TraesCS4B01G244300.1	Wheat	extracellular	45.92	41.57
KRG95273	Soybean	extracellular	55.36	41.49
KXG39856	Sorghum	extracellular	45.41	41.4
TraesCS4A01G066700.1	Wheat	extracellular	45.15	40.88
Solyc12g009420.1.1	Tomato	extracellular	41.84	40.29
Os03t0216800-01	Rice	extracellular	44.64	39.95
Solyc06g068040.2.1	Tomato	nucleus	43.88	39.36
Solyc09g098270.2.1	Tomato	cytosol	43.11	39.03
CDY61868	Canola	extracellular	53.06	37.89
Zm00001d048079_P001	Maize	extracellular	44.13	37.45
Solyc03g116500.2.1	Tomato	nucleus	43.11	37.39
Solyc04g025440.2.1	Tomato	extracellular	42.6	36.3
Solyc08g060970.2.1	Tomato	nucleus	36.73	36.27
CDY06100	Canola	extracellular	38.01	34.89
Solyc03g113230.1.1	Tomato	extracellular	36.48	34.79
Solyc03g116580.2.1	Tomato	extracellular	37.5	33.64
Solyc01g079130.1.1	Tomato	extracellular	39.03	32.42
Solyc01g100980.2.1	Tomato	extracellular	39.03	32.14
Solyc07g015870.2.1	Tomato	extracellular	35.97	31.4
Solyc04g008230.2.1	Tomato	nucleus	38.78	31.02
Solyc05g005040.2.1	Tomato	extracellular	36.73	30.57
Solyc05g005170.2.1	Tomato	nucleus	38.78	29.92

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	UniProt:A8U8B3	ProteinID:ABW38780.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF3	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	EnsemblPlantsGene:Solyc04g015530.1	EnsemblPlants:Solyc04g015530.1.1
UniParc:UPI00015E443A	SEG:seg	:	:	:	:

Description

Dehiscence polygalacturonase [Source:UniProtKB/TrEMBL;Acc:A8U8B3]

Coordinates

chr4:+:5756603..5764191

Molecular Weight (calculated)

42375.5 Da

IEP (calculated)

7.772

GRAVY (calculated)

-0.294

Length

392 amino acids

Sequence
(BLAST)

001: MEKFNEEEDQ AKVTTINVDS FGAKGDGSID DTNAFQKAWK EACSSSHVVN FVVSQNKKYL LKPIKFYGPC KSSITMQIYG TLLASDDTSD YKKDSRHWLI
101: FDSVQKLVVG GAGVINGNGK IWWQHSCKIN KKLPCKVAPT ALTFYKCNNL KVKDLKIENA QQIHLLIEKC VGVEVTKLVV TSPENSPNTD GIHITSTQNI
201: QISDSTIATG DDCISIVDGS QKVLATGITC GPGHGISIGS LGGGNSEAHV SDIHVNGAKL YETTNGLRIK TWPGGFGSAS NIKYQNVVMN NVKNPIIIDQ
301: NYCDQADGPC KAETDSAVEV KNVIYQNIKG TSATNDAISI KCSKKIPCEG ILMENVKLLG GNGETPNGIW GNINNLTCKN VLPECQKNSK IV

Best Arabidopsis Sequence Match ( AT3G57510.1 )
(BLAST)

001: MARCCRHLAV FLCVLLMLSL CKALSSNVDD GYGHEDGSFE SDSLLKLNND DVLSLISSDE TTLEASTVSV SNFGAKGDGK TDDTQAFKKA WKKACSTNGV
101: TTFLVPKGKT YLLKSTRFRG PCKSLRNFQI LGTLSASTKR SDYKDKNHWL ILEDVNNLSI DGGSTGIING NGKTWWQNSC KIDKSKPCTK APTALTLYNL
201: KNLNVKNLRV KNAQQIQISI EKCNKVEVSN VEITAPGDSP NTDGIHITNT QNIRVSNSDI GTGDDCISIE DGTQNLQIFD LTCGPGHGIS IGSLGDDNSK
301: AYVSGINVDG AKFSESDNGV RIKTYQGGSG TAKNIKFQNI RMENVKNPII IDQDYCDKDK CEDQESAVQV KNVVYKNISG TSATDVAITL NCSEKYPCQG
401: IVLENVKIKG GTASCKNANV KNQGTVSPKC S

Arabidopsis Description

ADPG1Polygalacturonase ADPG1 [Source:UniProtKB/Swiss-Prot;Acc:O23147]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.