Factsheet for GSMUA_Achr1P22940_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	50.34	55.92
VIT_13s0064g00760.t01	Wine grape	cytosol	39.23	52.11
KXG39856	Sorghum	extracellular	50.34	51.63
HORVU0Hr1G038940.1	Barley	cytosol	46.94	51.24
KRH71979	Soybean	extracellular	48.98	50.47
Bra029690.1-P	Field mustard	cytosol	45.58	49.51
Os03t0216800-01	Rice	extracellular	48.98	49.32
TraesCS4A01G066700.1	Wheat	extracellular	48.3	49.19
Bra001279.1-P	Field mustard	extracellular	47.85	48.28
KRH23942	Soybean	extracellular	48.07	48.18
CDX74019	Canola	extracellular	47.62	48.05
Solyc04g015530.1.1	Tomato	cytosol	42.63	47.96
TraesCS4B01G244300.1	Wheat	extracellular	46.94	47.81
CDY07963	Canola	extracellular	47.39	47.72
TraesCS4D01G243600.1	Wheat	extracellular	46.71	47.58
CDY28005	Canola	extracellular	45.12	47.27
VIT_08s0007g08330.t01	Wine grape	extracellular	47.39	47.07
VIT_08s0007g07770.t01	Wine grape	extracellular	47.17	47.06
CDY35976	Canola	extracellular	44.9	47.03
AT3G07970.1	Thale cress	extracellular	46.71	46.92
VIT_08s0007g07750.t01	Wine grape	extracellular	46.71	46.61
KRH39858	Soybean	extracellular	46.49	46.49
VIT_08s0007g07780.t01	Wine grape	extracellular	45.58	46.31
Solyc10g080210.1.1	Tomato	extracellular	47.85	46.17
KRH32949	Soybean	extracellular	45.58	45.89
KRH13966	Soybean	extracellular	45.58	45.79
AT2G41850.1	Thale cress	extracellular	44.9	45.73
VIT_13s0064g00750.t01	Wine grape	cytosol	47.17	45.61
VIT_08s0007g07760.t01	Wine grape	extracellular	44.9	45.52
Zm00001d048079_P001	Maize	extracellular	47.62	45.45
Bra016911.1-P	Field mustard	extracellular	44.22	45.03
CDY48768	Canola	extracellular	44.22	44.83
CDY06902	Canola	extracellular	43.99	44.8
CDY14791	Canola	extracellular	43.99	44.8
PGSC0003DMT400017691	Potato	extracellular	35.6	44.73
KRH33163	Soybean	extracellular, plastid	48.3	44.65
KRH66955	Soybean	extracellular	46.94	44.61
CDX79907	Canola	extracellular	43.31	43.91
Bra004655.1-P	Field mustard	extracellular	42.18	43.46
Solyc01g087280.1.1	Tomato	extracellular	41.5	43.06
CDX72025	Canola	extracellular	42.18	43.06
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	43.54	42.86
Bra007332.1-P	Field mustard	extracellular	41.95	42.82
PGSC0003DMT400070039	Potato	cytosol	39.0	41.95
CDX67693	Canola	extracellular	40.36	41.11
Bra003286.1-P	Field mustard	extracellular	40.36	41.11
GSMUA_Achr3P13670_001	Banana	extracellular	41.5	40.22
KRG95273	Soybean	extracellular	47.17	39.77
AT3G57510.1	Thale cress	extracellular	38.78	39.68
GSMUA_Achr7P01870_001	Banana	cytosol	39.46	39.55
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	33.11	38.22
GSMUA_Achr4P22100_001	Banana	extracellular	39.46	37.5
GSMUA_Achr11P...	Banana	extracellular	34.24	36.3
GSMUA_Achr11P...	Banana	extracellular	35.37	35.78
GSMUA_AchrUn_...	Banana	extracellular	22.68	34.72
GSMUA_Achr4P13200_001	Banana	extracellular	32.88	34.36
GSMUA_Achr8P06220_001	Banana	extracellular	36.05	33.97
GSMUA_Achr1P12720_001	Banana	extracellular	31.29	33.66
GSMUA_Achr9P22320_001	Banana	extracellular	30.84	32.93
GSMUA_Achr8P22240_001	Banana	extracellular	35.6	32.91
GSMUA_Achr5P09080_001	Banana	extracellular	35.83	32.44
CDY61868	Canola	extracellular	40.36	32.42
GSMUA_Achr6P22080_001	Banana	extracellular	35.15	31.96
GSMUA_Achr2P14330_001	Banana	extracellular	32.65	31.72
GSMUA_Achr4P02960_001	Banana	extracellular	34.01	31.58
GSMUA_AchrUn_...	Banana	mitochondrion	28.8	31.2
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	35.15	30.94
CDY06100	Canola	extracellular	29.02	29.98
GSMUA_Achr1P27280_001	Banana	extracellular	34.47	29.8
GSMUA_Achr3P08400_001	Banana	extracellular	35.83	28.11
GSMUA_Achr4P06370_001	Banana	extracellular	34.92	20.42

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSMUA_Achr1G22940_001	EnsemblPlants:GSMUA_Achr1P22940_001
EnsemblPlants:GSMUA_Achr1T22940_001	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0S2A2	PFAM:PF00295	ScanProsite:PS00502
PANTHER:PTHR31375	PANTHER:PTHR31375:SF28	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
UniParc:UPI000294A193	:	:	:	:	:

Description

Polygalacturonase [Source:GMGC_GENE;Acc:GSMUA_Achr1G22940_001]

Coordinates

chr1:+:17242640..17245031

Molecular Weight (calculated)

47949.2 Da

IEP (calculated)

7.927

GRAVY (calculated)

-0.114

Length

441 amino acids

Sequence
(BLAST)

001: MSEGKLLWLL TLTIFFHSRS LHGNSEGRLA SPSNSCFVDD AEECDATIHG FNGSIVGFPG SLFRPLPSRG VFNVEDYGAK GDGTDDSQAF GEAWRAACNS
101: SSSAVLLVPE NNKYILKPVA FSGPCRAHMT VMIKGTLEAS SNRSDWNVDN IRHWILFDGI RNLVVRGGGT VDGNGHVWWQ HSCKRNTSLP CIDAPTALFF
201: SSCKNLVVED LVVKDSQQMH VAFRRCTNVK ASKLTISAPE SSPNTDGIHV SGTKSILIKD TIIETGDDCI SIVSGSRRVI ATRIVCGPGH GISIGSLGAN
301: NTRAHVSKVL VDKVILKGTT NGVRIKTWQG GHGYAKHIIF QNVFMHDVQN PIIINQNYCD SRIPCHEQNS AVAVSRVLYR NIKGTSASEL AMEFDCSRSH
401: PCRHIVLQEI ELVGEGGGPA ASLCRYFKWE EIGKIIPAPC A

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.