Factsheet for GSMUA_Achr2P14330_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P24520_001	Banana	cytosol, extracellular, nucleus	64.76	76.96
GSMUA_Achr6P22080_001	Banana	extracellular	57.49	53.81
GSMUA_Achr5P09080_001	Banana	extracellular	57.27	53.39
GSMUA_Achr4P02960_001	Banana	extracellular	55.51	53.05
Zm00001d045974_P001	Maize	extracellular	48.46	52.51
GSMUA_Achr1P27280_001	Banana	extracellular	57.27	50.98
GSMUA_Achr1P12720_001	Banana	extracellular	38.77	42.93
GSMUA_Achr11P...	Banana	extracellular	37.67	39.22
GSMUA_Achr8P06220_001	Banana	extracellular	39.65	38.46
GSMUA_AchrUn_...	Banana	extracellular	24.23	38.19
GSMUA_Achr7P01870_001	Banana	cytosol	36.56	37.73
GSMUA_Achr8P22240_001	Banana	extracellular	39.43	37.53
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	41.19	37.33
GSMUA_AchrUn_...	Banana	mitochondrion	33.04	36.85
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	31.72	36.27
GSMUA_Achr4P13200_001	Banana	extracellular	33.7	36.26
GSMUA_Achr11P...	Banana	extracellular	32.82	35.82
GSMUA_Achr4P22100_001	Banana	extracellular	36.12	35.34
GSMUA_Achr3P13670_001	Banana	extracellular	34.36	34.29
GSMUA_Achr9P22320_001	Banana	extracellular	31.06	34.14
GSMUA_Achr1P22940_001	Banana	extracellular	31.72	32.65
GSMUA_Achr3P08400_001	Banana	extracellular	39.87	32.21
GSMUA_Achr4P06370_001	Banana	extracellular	34.58	20.82

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	EnsemblPlantsGene:GSMUA_Achr2G14330_001	EnsemblPlants:GSMUA_Achr2P14330_001	EnsemblPlants:GSMUA_Achr2T14330_001
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0S7X4	PFAM:PF00295	PFscan:PS51257	PANTHER:PTHR31375
PANTHER:PTHR31375:SF58	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000296DB3A	SEG:seg	:	:

Description

Putative Polygalacturonase At1g48100 [Source:GMGC_GENE;Acc:GSMUA_Achr2G14330_001]

Coordinates

chr2:+:16139825..16141754

Molecular Weight (calculated)

47889.5 Da

IEP (calculated)

7.896

GRAVY (calculated)

-0.183

Length

454 amino acids

Sequence
(BLAST)

001: MGRVSVRGLA TTVLLVVFVA CSCFATSGAT RDLTTWLAGR RGSGRSRRPT PKPKPSSGPS PSPRSSPPAP QGGGTFNVLD YGAKGDGVTD DTKAFQAAWA
101: AACEGSPSSV LVPADSDFLV GPISFSGPCK SNILFQLDGK IIAPGGKAWG SGLLQWLEFR LLKGIRIQGQ GIIEGQGNAW WSRDDPVSPP PSQMPEFAAN
201: YTAVRFYGSS DVTVTGITIQ NSPQCHLKFD SSHDIQVFGV TVSSPGDSPN TDGIHLQNSV GVSIHDTNLG CGDDCISIQT GCSNIMVQNV NCGPGHGISI
301: GGLGKGNTQA SVSNVTVQNA NMVGTTTGVR IKTWQGGSGY VKNIRFSKIK LSRVATPIVI DQFYCDQSKC RNQTSAVALS DITYDGVVGT YTVQPVYLAC
401: SDTEPCRSIH LDGIQLELLK QRGASYDPFC WQAYGDLQGP TEPPITCLQN GNSK

Best Arabidopsis Sequence Match ( AT1G10640.1 )
(BLAST)

001: MIMRRSLSLR SITMMILMAV LVWSVTLETC IARRGRHWRH SHRSSSDLSD SLSNKKPKSH GNSHHHSSHN NNHHHKSKPK PKPKLKTPPK AHDNNSPVVS
101: GPPKVQPPPL PPQKGSQVFN VMDFGAKGDG KCDDTKAFEA AWVAACKIEA SVMLVPPEYT YLVGPISFSG PYCQANIVFQ LDGTIIAPTD SKTWGKGLMW
201: WIDFTKLKGI KVQGKGVIDG RGSGWWQQDS PFIDSDTKLI VPLNNSANQN PPMPIRSELD ERMPSIKPTA LRFSGSFGVE VTGITIQNSP QCHLKFDDCV
301: GVVVHDIAVS SPGDSPNTDG IHLQNTKDVL IHSTTLACGD DCISIQTGCS NVFVHNVNCG PGHGISIGSL GKEGTKACVS NITVRDVAMH NTMTGVRIKT
401: WQGGVGSVKG IIFSNIQLNQ VQIPITINQF YCDHSKCKNQ TSAVAVEGVT YERIKGTYTV KPVHFACSDN FPCVDVQLSS IELKPVQEKY RMYDAYCWQT
501: FGELNTPTLP PIDCLKIGKP PRNKVQSDHD VC

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I5U6]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.