Factsheet for Solyc10g080210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583
extracellular: 22892874
nucleus: 25464976
plastid: 26371478

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015530.1.1	Tomato	cytosol	49.45	57.65
VIT_08s0007g08330.t01	Wine grape	extracellular	53.17	54.73
VIT_08s0007g07750.t01	Wine grape	extracellular	52.74	54.52
VIT_08s0007g07770.t01	Wine grape	extracellular	52.3	54.07
VIT_08s0007g07760.t01	Wine grape	extracellular	50.33	52.87
VIT_08s0007g07780.t01	Wine grape	extracellular	50.11	52.77
KRH71979	Soybean	extracellular	49.02	52.34
GSMUA_Achr10P...	Banana	cytosol, extracellular, nucleus	44.64	51.39
AT2G41850.1	Thale cress	extracellular	48.58	51.27
Bra007332.1-P	Field mustard	extracellular	48.36	51.16
CDX72025	Canola	extracellular	48.14	50.93
CDY14791	Canola	extracellular	47.7	50.35
CDX79907	Canola	extracellular	47.92	50.34
CDY48768	Canola	extracellular	47.92	50.34
Bra016911.1-P	Field mustard	extracellular	47.48	50.12
Bra004655.1-P	Field mustard	extracellular	46.83	50.0
CDY06902	Canola	extracellular	47.26	49.88
AT3G57510.1	Thale cress	extracellular	47.05	49.88
CDX67693	Canola	extracellular	46.39	48.96
Bra003286.1-P	Field mustard	extracellular	46.39	48.96
KRH66955	Soybean	extracellular	49.45	48.71
GSMUA_Achr1P22940_001	Banana	extracellular	46.17	47.85
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	46.39	47.32
KRH33163	Soybean	extracellular, plastid	48.8	46.75
HORVU0Hr1G038940.1	Barley	cytosol	40.04	45.3
Solyc01g087280.1.1	Tomato	extracellular	42.01	45.18
KXG39856	Sorghum	extracellular	42.01	44.65
TraesCS4D01G243600.1	Wheat	extracellular	40.7	42.96
TraesCS4B01G244300.1	Wheat	extracellular	40.7	42.96
TraesCS4A01G066700.1	Wheat	extracellular	40.48	42.73
KRG95273	Soybean	extracellular	48.58	42.45
Os03t0216800-01	Rice	extracellular	40.48	42.24
Solyc12g009420.1.1	Tomato	extracellular	37.2	41.77
Solyc08g060970.2.1	Tomato	nucleus	35.45	40.81
Solyc06g068040.2.1	Tomato	nucleus	38.95	40.73
Zm00001d048079_P001	Maize	extracellular	39.82	39.39
Solyc03g116500.2.1	Tomato	nucleus	38.95	39.38
CDY61868	Canola	extracellular	45.3	37.7
Solyc09g098270.2.1	Tomato	cytosol	35.01	36.95
CDY06100	Canola	extracellular	34.14	36.53
Solyc03g113230.1.1	Tomato	extracellular	32.82	36.5
Solyc04g025440.2.1	Tomato	extracellular	35.45	35.22
Solyc01g100980.2.1	Tomato	extracellular	35.01	33.61
Solyc07g015870.2.1	Tomato	extracellular	32.17	32.74
Solyc01g079130.1.1	Tomato	extracellular	33.7	32.63
Solyc04g008230.2.1	Tomato	nucleus	34.79	32.45
Solyc03g116580.2.1	Tomato	extracellular	30.42	31.81
Solyc05g005040.2.1	Tomato	extracellular	30.85	29.94
Solyc05g005170.2.1	Tomato	nucleus	33.26	29.92

Protein Annotations

Gene3D:2.160.20.10	MapMan:21.3.5.1.1	EMBL:A15981	EMBL:A24194	ProteinID:AAA34178.1	EMBL:AJ505947
ProteinID:CAA30308.1	ProteinID:CAA32235.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005623	GO:GO:0005975	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0009835	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787
GO:GO:0016798	GO:GO:0030312	GO:GO:0048046	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
EMBL:M20269	UniProt:P05117	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF3
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM
EnsemblPlantsGene:Solyc10g080210.1	EnsemblPlants:Solyc10g080210.1.1	UniParc:UPI000002C9F7	EMBL:X04583	EMBL:X05656	SEG:seg

Description

PG2Polygalacturonase-2 [Source:UniProtKB/Swiss-Prot;Acc:P05117]

Coordinates

chr10:-:61559168..61565803

Molecular Weight (calculated)

50054.2 Da

IEP (calculated)

6.820

GRAVY (calculated)

-0.193

Length

457 amino acids

Sequence
(BLAST)

001: MVIQRNSILL LIIIFASSIS TCRSNVIDDN LFKQVYDNIL EQEFAHDFQA YLSYLSKNIE SNNNIDKVDK NGIKVINVLS FGAKGDGKTY DNIAFEQAWN
101: EACSSRTPVQ FVVPKNKNYL LKQITFSGPC RSSISVKIFG SLEASSKISD YKDRRLWIAF DSVQNLVVGG GGTINGNGQV WWPSSCKINK SLPCRDAPTA
201: LTFWNCKNLK VNNLKSKNAQ QIHIKFESCT NVVASNLMIN ASAKSPNTDG VHVSNTQYIQ ISDTIIGTGD DCISIVSGSQ NVQATNITCG PGHGISIGSL
301: GSGNSEAYVS NVTVNEAKII GAENGVRIKT WQGGSGQASN IKFLNVEMQD VKYPIIIDQN YCDRVEPCIQ QFSAVQVKNV VYENIKGTSA TKVAIKFDCS
401: TNFPCEGIIM ENINLVGESG KPSEATCKNV HFNNAEHVTP HCTSLEISED EALLYNY

Best Arabidopsis Sequence Match ( AT3G07970.1 )
(BLAST)

001: MYEKIIILSV FLLTFLPSCF SSYPFNHRDD LFMSSNVYYE TNRQHQHGHN TRNSHLKNRH GYAPRSSPRS FNVNTFGAKA NGNDDSKAFM KAWEAACSST
101: GIVYIVAPKN RDYMLKAVTF SGPCKSSLII FKIYGRIEAW ENPSDYKERR HWIVFENVNN LRVEGGGRID GNGHIWWPKS CKINPQLPCL GAPTAVTFVE
201: CNNLRVSNIR LENAQQMHLT FQDCKNVKAL NLMVTSPADS PNTDGIHVSG TQNILIQDSI VRTGDDCISI VSGSENVRAT GITCGPGHGI SIGSLGEDNS
301: EAYVSNVVVN KATLIGTTNG VRIKTWQGGH GMAKNIIFQD IIMKNVTNPI IINQDYCDRV EACPEQKSAV QVSNVLYKNI QGTSSRPIAV KFVCSKNIPC
401: RGISMQNVKL VDQTQQDVSK ASCSNVKLDT RGNVSPLCT

Arabidopsis Description

QRT2Polygalacturonase QRT2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFB7]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.