Factsheet for Solyc03g113230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g05670.t01	Wine grape	extracellular	44.28	46.31
VIT_17s0000g05660.t01	Wine grape	extracellular	42.58	45.22
CDY56952	Canola	extracellular	42.34	41.33
CDX74418	Canola	extracellular	42.09	41.0
Bra025631.1-P	Field mustard	extracellular	41.85	40.76
AT5G39910.1	Thale cress	extracellular	36.74	40.48
Solyc08g060970.2.1	Tomato	nucleus	37.47	38.79
Solyc12g009420.1.1	Tomato	extracellular	38.2	38.57
Solyc04g015530.1.1	Tomato	cytosol	34.79	36.48
Solyc01g087280.1.1	Tomato	extracellular	37.47	36.24
Solyc03g116580.2.1	Tomato	extracellular	37.96	35.7
Solyc09g098270.2.1	Tomato	cytosol	36.01	34.18
Solyc07g015870.2.1	Tomato	extracellular	37.23	34.08
Solyc06g068040.2.1	Tomato	nucleus	35.28	33.18
Solyc10g080210.1.1	Tomato	extracellular	36.5	32.82
Solyc05g005040.2.1	Tomato	extracellular	37.23	32.48
Solyc04g025440.2.1	Tomato	extracellular	36.01	32.17
Solyc03g116500.2.1	Tomato	nucleus	34.55	31.42
Solyc01g079130.1.1	Tomato	extracellular	35.77	31.14
Solyc01g100980.2.1	Tomato	extracellular	36.01	31.09
Os01t0172900-00	Rice	nucleus	22.14	30.85
Zm00001d039668_P001	Maize	plastid	32.12	30.21
Solyc04g008230.2.1	Tomato	nucleus	33.58	28.16
Solyc05g005170.2.1	Tomato	nucleus	34.55	27.95

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:K4BKH6
PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF41	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc03g113230.1	EnsemblPlants:Solyc03g113230.1.1
UniParc:UPI0002767A3F	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:63440256..63442879

Molecular Weight (calculated)

45196.7 Da

IEP (calculated)

6.335

GRAVY (calculated)

-0.095

Length

411 amino acids

Sequence
(BLAST)

001: MVIMKMLISI FVASLLPSLI YSAPDFPVFN VVDYGAVGDG LTDATNAFIK TWEATCTSSF SSPIMYVPSE NTFLLHPIKL EGPCVSAGLT VEMLKRPTYL
101: LPFNQLILQI NGNITAPREP SRWRCYDKRC DKWIHFKHAN GLTVRGNGTI NGRGYNWWNV NDRLRPTAFE ISHSENISLT GLRFIDSPRM HVHFEKSKSA
201: RVTNITIDAP GESPNTDGIH VSGSSDVIID HCQIGTGDDC ISIVDGCSHL NISNIICGPG HGISIGSLGK HGSNDNVEDI FVSDVLFISS TNGARIKTWQ
301: GGKGHASNII FERIRTQDSY NPIIIDQFYC DGEYCTEHDS AVKVSNVTFR HVQGTSQGEF AVKLDCSASV PCTGIVLEDI DIRSGYENQA RVYTSNVQGI
401: VMGLTIPQTH F

Best Arabidopsis Sequence Match ( AT5G44840.1 )
(BLAST)

001: MEIILRGVFL LTLLHSILVN GQIYDVLEFG ADGNGITDDS KAFVKAWSAM CGSGGNSKTF IIPSNKTFLL QPLTFQGPCK SPSVQVKFDG KIVAPINKAA
101: WSDYKLFRWV SFKEIIGLTV NGSGTIHGRG SSFWKQGLPA SKRPTQLHFQ RCNDLMITGI TSFNSPKNHI SISECKRVKI TKIKLVAPHD SPNTDGINIS
201: ESSDVDIYDT VIGTGDDCVA INSGSMNINI ARMNCGPGHG ISVGSVGRDG EESIVENVQV TNCTFIRTDN GARIKTWPNG KGYAKNILFK SLTFRETKNP
301: IIIDQNYVDK GRLDVEESAV AISNVTFTDL RGTSKLDEII KIDCSKVTYC KDIVLDKIDI ATVDGNKPIV ECSNVYGKSI NANEANGCFK T

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT5G44840]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.