Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 4
- golgi 3
- plastid 1
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY56952 | Canola | extracellular | 96.92 | 97.15 |
CDX74418 | Canola | extracellular | 96.68 | 96.68 |
AT5G39910.1 | Thale cress | extracellular | 64.93 | 73.46 |
VIT_17s0000g05660.t01 | Wine grape | extracellular | 41.0 | 44.7 |
VIT_17s0000g05670.t01 | Wine grape | extracellular | 40.76 | 43.77 |
Solyc03g113230.1.1 | Tomato | extracellular | 40.76 | 41.85 |
Bra025099.1-P | Field mustard | extracellular | 35.78 | 37.75 |
Bra029690.1-P | Field mustard | cytosol | 36.02 | 37.44 |
Bra023600.1-P | Field mustard | extracellular | 37.68 | 37.15 |
Bra016911.1-P | Field mustard | extracellular | 36.73 | 35.8 |
Bra007332.1-P | Field mustard | extracellular | 36.49 | 35.65 |
Bra003286.1-P | Field mustard | extracellular | 36.26 | 35.33 |
Bra008748.1-P | Field mustard | extracellular | 36.73 | 35.31 |
Bra004655.1-P | Field mustard | extracellular | 35.78 | 35.28 |
Bra008572.1-P | Field mustard | extracellular | 36.26 | 35.25 |
Bra025103.1-P | Field mustard | extracellular | 33.41 | 35.25 |
Bra027926.1-P | Field mustard | extracellular | 36.26 | 35.17 |
Bra008493.1-P | Field mustard | extracellular | 31.99 | 34.62 |
Bra027210.1-P | Field mustard | extracellular | 36.97 | 34.21 |
Bra001279.1-P | Field mustard | extracellular | 35.31 | 34.1 |
Bra024602.1-P | Field mustard | cytosol | 35.07 | 33.48 |
Bra016912.1-P | Field mustard | extracellular, nucleus, peroxisome | 35.55 | 33.48 |
Bra016213.1-P | Field mustard | extracellular | 36.97 | 33.4 |
Bra003555.1-P | Field mustard | extracellular | 35.31 | 33.33 |
Bra027211.1-P | Field mustard | extracellular | 35.55 | 33.26 |
Bra001605.1-P | Field mustard | extracellular | 35.55 | 33.19 |
Bra011341.1-P | Field mustard | cytosol | 30.57 | 32.82 |
Bra012375.1-P | Field mustard | cytosol | 34.12 | 32.29 |
Bra016345.1-P | Field mustard | extracellular | 35.78 | 32.27 |
Bra000911.1-P | Field mustard | extracellular, vacuole | 36.73 | 31.89 |
Bra032600.1-P | Field mustard | extracellular | 36.73 | 31.57 |
Bra018707.1-P | Field mustard | extracellular | 35.07 | 31.36 |
Bra033328.1-P | Field mustard | extracellular | 36.02 | 30.96 |
Bra025216.1-P | Field mustard | extracellular | 34.36 | 30.85 |
Zm00001d039668_P001 | Maize | plastid | 31.28 | 30.21 |
Os01t0172900-00 | Rice | nucleus | 21.09 | 30.17 |
Bra031724.1-P | Field mustard | extracellular | 36.73 | 30.1 |
Bra018429.1-P | Field mustard | extracellular, golgi, vacuole | 36.49 | 29.0 |
Bra019912.1-P | Field mustard | extracellular, golgi, vacuole | 35.55 | 28.14 |
Bra027148.1-P | Field mustard | extracellular | 35.55 | 27.99 |
Bra040077.1-P | Field mustard | extracellular | 22.51 | 26.03 |
Protein Annotations
Gene3D:2.160.20.10 | MapMan:50.3.2 | EnsemblPlantsGene:Bra025631 | EnsemblPlants:Bra025631.1 | EnsemblPlants:Bra025631.1-P | GO:GO:0003674 |
GO:GO:0003824 | GO:GO:0004650 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005975 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0071555 |
InterPro:Glyco_hydro_28 | InterPro:IPR012334 | UniProt:M4EA24 | PFAM:PF00295 | PANTHER:PTHR31375 | PANTHER:PTHR31375:SF41 |
InterPro:PbH1 | InterPro:Pectin_lyas_fold | InterPro:Pectin_lyase_fold/virulence | SMART:SM00710 | SUPFAM:SSF51126 | SignalP:SignalP-noTM |
UniParc:UPI0002544B4A | SEG:seg | : | : | : | : |
Description
AT1G02460 (E=6e-076) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
Coordinates
chrA04:-:7387475..7390293
Molecular Weight (calculated)
47248.2 Da
IEP (calculated)
7.666
GRAVY (calculated)
-0.375
Length
422 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFFMLLTYL FSLFHNNQTG PSHSSPDVNS KIFNVFDYGA IGNGYADDTK AFMDAWEDTC NCIGSKSTME IPQGRTFLLQ PVGFHGPCKS KKIVFSISGN
101: LTAPYAPYQW KCNEDYCHQW IEFAHINGLY IDGPGTIDGQ GPKWWSLNCK KYEQGMVISH SSNVHISNIV VKDSPNFQMS LEDSKWIFVK QLTITADGDS
201: PNTDGIHIQR CLNVFVHNSN IHTGDDCISI GDGSKYVNIS GISCGPGHGI SKFYIAQTSI GSLGRNGSKE TVENVIVRDC IFRKTDNGVR IKTWQGGRGL
301: VRNILFERIK LHGVTRPIII DQFYCPHSQC NNHTDAVEIK NIMYKHIHGT AVKKPFVELL CSKSVPCRDI YMNDIDILDQ EEGKGKKYHK RSSHPPAECI
401: NVRGESNGAI KPKLACLDSE RH
101: LTAPYAPYQW KCNEDYCHQW IEFAHINGLY IDGPGTIDGQ GPKWWSLNCK KYEQGMVISH SSNVHISNIV VKDSPNFQMS LEDSKWIFVK QLTITADGDS
201: PNTDGIHIQR CLNVFVHNSN IHTGDDCISI GDGSKYVNIS GISCGPGHGI SKFYIAQTSI GSLGRNGSKE TVENVIVRDC IFRKTDNGVR IKTWQGGRGL
301: VRNILFERIK LHGVTRPIII DQFYCPHSQC NNHTDAVEIK NIMYKHIHGT AVKKPFVELL CSKSVPCRDI YMNDIDILDQ EEGKGKKYHK RSSHPPAECI
401: NVRGESNGAI KPKLACLDSE RH
001: MANFVMFLNF LLSLTVFHTF QSVQSHFSLY NDNNIFNVLN YGAIGDGFSD DSKAFKDAWE DTCNYIGSES IMEIPEGNTF LLQPIEFHGP CKSKKIILSI
101: SGNLIAPESP YEWKCNKDDC HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV IVKQLTITAD GDSPNTDGIH
201: IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK
301: KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV MKPKLACLES KRH
101: SGNLIAPESP YEWKCNKDDC HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV IVKQLTITAD GDSPNTDGIH
201: IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK
301: KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV MKPKLACLES KRH
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KFW5]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.