Skip to main content
crop-pal logo
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 5
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 4
  • golgi 3
  • plastid 1
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY56952 Canola extracellular 96.92 97.15
CDX74418 Canola extracellular 96.68 96.68
AT5G39910.1 Thale cress extracellular 64.93 73.46
VIT_17s0000g05660.t01 Wine grape extracellular 41.0 44.7
VIT_17s0000g05670.t01 Wine grape extracellular 40.76 43.77
Solyc03g113230.1.1 Tomato extracellular 40.76 41.85
Bra025099.1-P Field mustard extracellular 35.78 37.75
Bra029690.1-P Field mustard cytosol 36.02 37.44
Bra023600.1-P Field mustard extracellular 37.68 37.15
Bra016911.1-P Field mustard extracellular 36.73 35.8
Bra007332.1-P Field mustard extracellular 36.49 35.65
Bra003286.1-P Field mustard extracellular 36.26 35.33
Bra008748.1-P Field mustard extracellular 36.73 35.31
Bra004655.1-P Field mustard extracellular 35.78 35.28
Bra008572.1-P Field mustard extracellular 36.26 35.25
Bra025103.1-P Field mustard extracellular 33.41 35.25
Bra027926.1-P Field mustard extracellular 36.26 35.17
Bra008493.1-P Field mustard extracellular 31.99 34.62
Bra027210.1-P Field mustard extracellular 36.97 34.21
Bra001279.1-P Field mustard extracellular 35.31 34.1
Bra024602.1-P Field mustard cytosol 35.07 33.48
Bra016912.1-P Field mustard extracellular, nucleus, peroxisome 35.55 33.48
Bra016213.1-P Field mustard extracellular 36.97 33.4
Bra003555.1-P Field mustard extracellular 35.31 33.33
Bra027211.1-P Field mustard extracellular 35.55 33.26
Bra001605.1-P Field mustard extracellular 35.55 33.19
Bra011341.1-P Field mustard cytosol 30.57 32.82
Bra012375.1-P Field mustard cytosol 34.12 32.29
Bra016345.1-P Field mustard extracellular 35.78 32.27
Bra000911.1-P Field mustard extracellular, vacuole 36.73 31.89
Bra032600.1-P Field mustard extracellular 36.73 31.57
Bra018707.1-P Field mustard extracellular 35.07 31.36
Bra033328.1-P Field mustard extracellular 36.02 30.96
Bra025216.1-P Field mustard extracellular 34.36 30.85
Zm00001d039668_P001 Maize plastid 31.28 30.21
Os01t0172900-00 Rice nucleus 21.09 30.17
Bra031724.1-P Field mustard extracellular 36.73 30.1
Bra018429.1-P Field mustard extracellular, golgi, vacuole 36.49 29.0
Bra019912.1-P Field mustard extracellular, golgi, vacuole 35.55 28.14
Bra027148.1-P Field mustard extracellular 35.55 27.99
Bra040077.1-P Field mustard extracellular 22.51 26.03
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2EnsemblPlantsGene:Bra025631EnsemblPlants:Bra025631.1EnsemblPlants:Bra025631.1-PGO:GO:0003674
GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005576GO:GO:0005975GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0016043GO:GO:0016787GO:GO:0016798GO:GO:0071555
InterPro:Glyco_hydro_28InterPro:IPR012334UniProt:M4EA24PFAM:PF00295PANTHER:PTHR31375PANTHER:PTHR31375:SF41
InterPro:PbH1InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126SignalP:SignalP-noTM
UniParc:UPI0002544B4ASEG:seg::::
Description
AT1G02460 (E=6e-076) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein
Coordinates
chrA04:-:7387475..7390293
Molecular Weight (calculated)
47248.2 Da
IEP (calculated)
7.666
GRAVY (calculated)
-0.375
Length
422 amino acids
Sequence
(BLAST)
001: MDFFMLLTYL FSLFHNNQTG PSHSSPDVNS KIFNVFDYGA IGNGYADDTK AFMDAWEDTC NCIGSKSTME IPQGRTFLLQ PVGFHGPCKS KKIVFSISGN
101: LTAPYAPYQW KCNEDYCHQW IEFAHINGLY IDGPGTIDGQ GPKWWSLNCK KYEQGMVISH SSNVHISNIV VKDSPNFQMS LEDSKWIFVK QLTITADGDS
201: PNTDGIHIQR CLNVFVHNSN IHTGDDCISI GDGSKYVNIS GISCGPGHGI SKFYIAQTSI GSLGRNGSKE TVENVIVRDC IFRKTDNGVR IKTWQGGRGL
301: VRNILFERIK LHGVTRPIII DQFYCPHSQC NNHTDAVEIK NIMYKHIHGT AVKKPFVELL CSKSVPCRDI YMNDIDILDQ EEGKGKKYHK RSSHPPAECI
401: NVRGESNGAI KPKLACLDSE RH
Best Arabidopsis Sequence Match ( AT5G39910.1 )
(BLAST)
001: MANFVMFLNF LLSLTVFHTF QSVQSHFSLY NDNNIFNVLN YGAIGDGFSD DSKAFKDAWE DTCNYIGSES IMEIPEGNTF LLQPIEFHGP CKSKKIILSI
101: SGNLIAPESP YEWKCNKDDC HQWIEFAHIN GLYIDGHGLM ACLKRPRGVV ISHSSNVHIS NIMVKDSPNF QMSLEDSKWV IVKQLTITAD GDSPNTDGIH
201: IQRSQNVIVY DSNIRTGDDC ISIGDGSKYI NISRISCGPG HGISIGSLGR YGTKETVENV VVRDCTFRET TNGVRIKTWQ TKAVEIKNVM FNHIHGTSIK
301: KPFVQLLCSK SVPCRDIFMN DINIHDENEE EEKKYHKSLS RHDDHPSAEC INVKGESNGV MKPKLACLES KRH
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4KFW5]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.