Factsheet for Bra027210.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97704	Canola	extracellular	99.34	99.34
CDY30107	Canola	extracellular	98.46	98.46
Bra027211.1-P	Field mustard	extracellular	87.06	88.03
Bra001605.1-P	Field mustard	extracellular	85.53	86.28
AT3G15720.1	Thale cress	extracellular	79.61	79.61
Bra025099.1-P	Field mustard	extracellular	39.47	45.0
VIT_09s0002g06650.t01	Wine grape	extracellular	39.47	44.55
Bra025103.1-P	Field mustard	extracellular	38.82	44.25
VIT_09s0002g06580.t01	Wine grape	cytosol	37.72	43.99
VIT_09s0002g06610.t01	Wine grape	extracellular	37.28	43.7
PGSC0003DMT400056828	Potato	extracellular	37.5	42.96
PGSC0003DMT400008955	Potato	extracellular	32.02	41.95
KRH23567	Soybean	extracellular	36.84	41.9
KRH09740	Soybean	extracellular	37.28	40.0
Bra008572.1-P	Field mustard	extracellular	37.94	39.86
Solyc03g116580.2.1	Tomato	extracellular	37.94	39.59
Bra023600.1-P	Field mustard	extracellular	37.06	39.49
KXG26899	Sorghum	extracellular	35.31	38.33
HORVU2Hr1G096130.1	Barley	extracellular	33.77	38.02
GSMUA_Achr11P...	Banana	extracellular	34.65	37.98
Bra008493.1-P	Field mustard	extracellular	32.24	37.69
Bra029690.1-P	Field mustard	cytosol	33.55	37.68
TraesCS2B01G423300.1	Wheat	extracellular	33.11	37.66
Bra011341.1-P	Field mustard	cytosol	32.02	37.15
TraesCS2B01G423400.1	Wheat	plastid	28.51	37.04
GSMUA_Achr4P13200_001	Banana	extracellular	34.21	36.97
Bra025631.1-P	Field mustard	extracellular	34.21	36.97
Bra004655.1-P	Field mustard	extracellular	34.65	36.92
TraesCS2D01G402100.1	Wheat	extracellular	32.68	36.79
GSMUA_Achr9P22320_001	Banana	extracellular	33.11	36.56
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	32.46	36.54
Bra016911.1-P	Field mustard	extracellular	34.65	36.49
TraesCS2D01G402200.1	Wheat	extracellular	31.14	36.32
TraesCS2A01G405100.1	Wheat	extracellular	33.11	36.21
Bra001279.1-P	Field mustard	extracellular	34.43	35.93
Bra003286.1-P	Field mustard	extracellular	33.99	35.8
TraesCS2A01G405600.1	Wheat	extracellular	25.0	35.74
TraesCS2B01G423200.1	Wheat	extracellular	32.89	35.29
TraesCS2D01G402000.1	Wheat	extracellular	32.89	35.05
Bra007332.1-P	Field mustard	extracellular	32.89	34.72
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	33.99	34.6
TraesCS2D01G402300.1	Wheat	extracellular	25.22	34.53
Bra027926.1-P	Field mustard	extracellular	32.68	34.25
Bra024602.1-P	Field mustard	cytosol	32.68	33.71
Bra008748.1-P	Field mustard	extracellular	31.58	32.8
Bra016345.1-P	Field mustard	extracellular	33.11	32.27
Bra003555.1-P	Field mustard	extracellular	31.58	32.21
Bra012375.1-P	Field mustard	cytosol	31.14	31.84
Bra040077.1-P	Field mustard	extracellular	25.22	31.51
Bra000911.1-P	Field mustard	extracellular, vacuole	33.55	31.48
Bra016213.1-P	Field mustard	extracellular	32.02	31.26
Zm00001d039668_P001	Maize	plastid	29.82	31.12
Bra025216.1-P	Field mustard	extracellular	32.02	31.06
Bra032600.1-P	Field mustard	extracellular	32.89	30.55
Bra033328.1-P	Field mustard	extracellular	32.02	29.74
Bra018707.1-P	Field mustard	extracellular	30.48	29.45
Os01t0172900-00	Rice	nucleus	17.98	27.8
Bra031724.1-P	Field mustard	extracellular	30.7	27.18
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	30.7	26.37
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	29.61	25.33
Bra027148.1-P	Field mustard	extracellular	28.95	24.63
GSMUA_Achr4P06370_001	Banana	extracellular	33.33	20.16

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra027210	EnsemblPlants:Bra027210.1	EnsemblPlants:Bra027210.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4EEJ8	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
SignalP:SignalP-noTM	UniParc:UPI000254793D	SEG:seg	:	:	:

Description

AT3G15720 (E=1e-206) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA05:+:19725009..19727095

Molecular Weight (calculated)

48823.0 Da

IEP (calculated)

5.100

GRAVY (calculated)

-0.048

Length

456 amino acids

Sequence
(BLAST)

001: MQKKTSILIF SVFILQIFTY SKALDVTQYG AVGDGVTDDS QAFLKAWEDV CSGAGDGQLI IPAGMAFMLQ PLKFEGSCKS TPIVVQILGN LVASSRGKWK
101: GDKDQWILFS DIEGLVVEGN GEINGQGSSW WEHKGSSRPT ALKFKSCNNL RLSGLTHVDS AMAHIHINGC NDVTISNLRI NAPESSPNTD GIDVAVSSNV
201: IIQDCVIATG DDCIAINSGT ANIRISGIDC GPGHGISIGS LGKDGEIASV EDVCVQNCNF RGTMNGARIK TWPGGSGYAR RITFNGITLD NVENPIIIDQ
301: HYNNGDSDKS TDDKSSAVEV SKVVYSNFVG TSRSEYGVNF RCSTRVPCTE IFLKDVKIET ASSGMGQVAQ GQCLNVRGGV STLAVPGLEC LALSTDMLSW
401: GTMPEQACML PQQSVQPNTR PLQDPLWVYG SRGERLGVYR VVLTSLISFG FSYVLG

Best Arabidopsis Sequence Match ( AT3G15720.1 )
(BLAST)

001: MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV CSGTGDGQFV VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR

Arabidopsis Description

Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.