Factsheet for Bra000911.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 3
vacuole 4
plasma membrane 4
golgi 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71357	Canola	extracellular, vacuole	64.81	99.37
AT4G01890.1	Thale cress	extracellular	76.13	79.23
Bra032600.1-P	Field mustard	extracellular	66.87	66.19
Bra033328.1-P	Field mustard	extracellular	65.23	64.56
KRH68311	Soybean	extracellular	57.82	60.82
KRH69173	Soybean	extracellular	58.85	60.47
KRG96576	Soybean	extracellular	57.41	60.39
KRH31755	Soybean	extracellular	58.44	59.79
PGSC0003DMT400013344	Potato	extracellular	57.61	59.32
VIT_07s0005g02090.t01	Wine grape	extracellular	56.38	58.92
Solyc01g079130.1.1	Tomato	extracellular	57.2	58.9
Os01t0296200-00	Rice	extracellular	32.1	58.65
GSMUA_Achr11P...	Banana	extracellular	50.62	56.42
Bra027926.1-P	Field mustard	extracellular	49.59	55.4
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	53.09	51.5
TraesCS1D01G311000.1	Wheat	extracellular	50.62	51.36
Bra018707.1-P	Field mustard	extracellular	49.79	51.27
HORVU1Hr1G067840.1	Barley	extracellular, plastid	50.21	51.26
TraesCS1A01G311100.1	Wheat	extracellular	50.82	51.03
TraesCS1B01G322500.1	Wheat	extracellular	50.62	50.83
Zm00001d040589_P001	Maize	extracellular	50.21	48.9
Zm00001d009057_P001	Maize	extracellular	41.77	47.99
EES00620	Sorghum	extracellular	49.79	47.83
GSMUA_Achr3P08400_001	Banana	extracellular	53.29	46.09
Bra008748.1-P	Field mustard	extracellular	37.86	41.91
Bra025216.1-P	Field mustard	extracellular	37.24	38.51
Bra003286.1-P	Field mustard	extracellular	33.95	38.11
Bra007332.1-P	Field mustard	extracellular	33.74	37.96
Bra024602.1-P	Field mustard	cytosol	33.95	37.33
Bra012375.1-P	Field mustard	cytosol	34.16	37.22
Bra029690.1-P	Field mustard	cytosol	31.07	37.19
Bra016911.1-P	Field mustard	extracellular	33.13	37.18
Bra031724.1-P	Field mustard	extracellular	39.3	37.09
Bra019912.1-P	Field mustard	extracellular, golgi, vacuole	40.53	36.96
Bra008493.1-P	Field mustard	extracellular	29.63	36.92
Bra003555.1-P	Field mustard	extracellular	33.95	36.91
Bra025631.1-P	Field mustard	extracellular	31.89	36.73
Bra004655.1-P	Field mustard	extracellular	32.3	36.68
Bra016213.1-P	Field mustard	extracellular	35.19	36.62
Bra016345.1-P	Field mustard	extracellular	35.19	36.54
Bra018429.1-P	Field mustard	extracellular, golgi, vacuole	39.71	36.35
Bra027148.1-P	Field mustard	extracellular	39.3	35.63
Bra016912.1-P	Field mustard	extracellular, nucleus, peroxisome	32.3	35.04
Bra027211.1-P	Field mustard	extracellular	31.69	34.15
Bra001605.1-P	Field mustard	extracellular	31.69	34.07
Bra001279.1-P	Field mustard	extracellular	30.45	33.87
Bra025099.1-P	Field mustard	extracellular	27.78	33.75
Bra027210.1-P	Field mustard	extracellular	31.48	33.55
Bra025103.1-P	Field mustard	extracellular	26.75	32.5
Bra008572.1-P	Field mustard	extracellular	28.6	32.03
Bra011341.1-P	Field mustard	cytosol	25.31	31.3
Bra023600.1-P	Field mustard	extracellular	27.16	30.84
Bra040077.1-P	Field mustard	extracellular	17.7	23.56

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	EnsemblPlantsGene:Bra000911	EnsemblPlants:Bra000911.1	EnsemblPlants:Bra000911.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M4C9N2	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF43
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI0002540679
SEG:seg	:	:	:	:	:

Description

AT4G01890 (E=2e-193) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein

Coordinates

chrA03:-:13865333..13867586

Molecular Weight (calculated)

53246.4 Da

IEP (calculated)

5.359

GRAVY (calculated)

-0.279

Length

486 amino acids

Sequence
(BLAST)

001: MLKISRDPFL RFTTLILITS SLFSYGTEAR LHYYNDIHNP NSYPEPPYSS FSQSQPPSIS PDPDDLSQPP SPCQDLDQEV VHDVRNYGAI GDGITDDTDA
101: FKTAWDSACS NDEDNNTVSI LLVPFGFTFV IHSTIFTGPC RSYQYFQVDG TIVPRDGPES WPSGFNKRQW LVFYRIKGMA LIGNGVIDGR GQKWWDLPCK
201: PHRNVNKTTA LTGPCESPAA LRFFMSSNLS MQGVTIKNSP QFHMTFDGCH EVHINSLRIT SPPSSPNTDG IHIENSNSVE IHNSVISNGD DCVSIGSGSY
301: NIDILNLTCG PGGHGISIGS LGNQNSRACV SNITVRDSFI KFSDNGVRIK TWQGGSGSVS GVTFDNIQMD NVRNPIIIDQ YYCTSKNCPN KTNAVFVNDV
401: VYQSIKGTYD RRSPPMHFGC SNNVPCVNLT LSDIDLVPSK GEMVVDPFCW NAYGVVDELS VPSISCLKSN PSTLLLGGLL GECGAR

Best Arabidopsis Sequence Match ( AT4G01890.1 )
(BLAST)

001: MLKLSRDPIL CITTLILIIT FSLLSYGTEA RLHHQASQPP SPSPNPNDPS KSPSRSQDLD HEVVYDVRKY GAVGNGVADD TVSFKTAWDS ACSNNKNNTA
101: SVLHVPYGFT FMIRSTIFTG PCRSYQYFQV DGTIVPRDGP KSWPSSLNKR QWLAFYRING MALQGAGVID GRGQNWWDLP CKPHQNVNKT KLAGPCESPA
201: ALRFFMSSNV IVKGLSIKNS PQVHLKLDGC HVVHINSLRI ISPPASPNTD GIHIENSNSV EIYNSVISNG DDCVSIGPGA YDIDIRNITC GPGGHGISIG
301: SLGEKNSHAC VSNVTVRDSF IKFSENGVRI KTWQGGSGSV SGVTFDNIHV DTVRNPIIID QYYCTTKSCA NKTSAVFVND IVYQSIKGTY DIRSPPMHFG
401: CSNNVPCTNL TLSNIELLPS KEDIVVGPFC WNAYGITDEF SVPLISCLKS NPSTSLLSGL SGRCGSP

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT4G01890]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.