Factsheet for Zm00001d009057_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0296200-00	Rice	extracellular	51.54	81.95
Zm00001d040589_P001	Maize	extracellular	91.73	77.76
EES00620	Sorghum	extracellular	90.07	75.3
HORVU1Hr1G067840.1	Barley	extracellular, plastid	76.83	68.28
TraesCS1A01G311100.1	Wheat	extracellular	77.07	67.36
TraesCS1B01G322500.1	Wheat	extracellular	76.83	67.15
TraesCS1D01G311000.1	Wheat	extracellular	75.89	67.01
CDY67535	Canola	extracellular	39.01	53.05
GSMUA_Achr11P...	Banana	extracellular	52.48	50.92
GSMUA_Achr9P16670_001	Banana	extracellular, plasma membrane	60.28	50.9
PGSC0003DMT400007095	Potato	cytosol	48.23	46.9
PGSC0003DMT400013344	Potato	extracellular	51.3	45.97
VIT_14s0060g00620.t01	Wine grape	extracellular	49.88	45.47
VIT_07s0005g02090.t01	Wine grape	extracellular	49.88	45.38
Solyc01g079130.1.1	Tomato	extracellular	50.35	45.13
KRH31755	Soybean	extracellular	50.59	45.05
GSMUA_Achr3P08400_001	Banana	extracellular	59.34	44.66
KRH69173	Soybean	extracellular	49.88	44.61
Solyc01g100980.2.1	Tomato	extracellular	50.12	44.54
KRG96576	Soybean	extracellular	48.46	44.37
KRG96690	Soybean	extracellular	47.99	44.23
KRH68311	Soybean	extracellular	47.99	43.94
AT1G02460.1	Thale cress	extracellular	50.12	43.18
CDX89966	Canola	extracellular	49.65	42.77
CDY15246	Canola	extracellular	49.41	42.57
Bra033328.1-P	Field mustard	extracellular	49.41	42.57
Bra032600.1-P	Field mustard	extracellular	49.41	42.57
CDX77909	Canola	extracellular	48.94	42.16
Bra000911.1-P	Field mustard	extracellular, vacuole	47.99	41.77
AT4G01890.1	Thale cress	extracellular	46.1	41.76
Zm00001d040725_P002	Maize	extracellular, vacuole	44.44	37.45
Zm00001d045974_P001	Maize	extracellular	35.7	36.04
Zm00001d011156_P001	Maize	plastid	35.93	34.86
Zm00001d038874_P002	Maize	extracellular	32.39	33.25
CDY71357	Canola	extracellular, vacuole	24.82	33.12
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	39.95	32.75
Zm00001d011444_P002	Maize	extracellular	40.9	31.98
Zm00001d034552_P001	Maize	extracellular	33.33	31.97
Zm00001d044110_P001	Maize	extracellular	40.9	31.92
Zm00001d034551_P001	Maize	extracellular	32.86	31.88
Zm00001d034559_P001	Maize	extracellular	32.62	29.05
Zm00001d013032_P001	Maize	extracellular	33.33	28.95
Zm00001d015129_P001	Maize	mitochondrion	34.28	28.1
Zm00001d048079_P001	Maize	extracellular	30.5	27.92
Zm00001d039668_P001	Maize	plastid	28.13	27.23
Zm00001d009167_P001	Maize	extracellular	48.7	26.89
Zm00001d038875_P001	Maize	extracellular	27.66	24.84

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6FHK6	ProteinID:AQK91287.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0016829	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF99	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI0008452850
EnsemblPlantsGene:Zm00001d009057	EnsemblPlants:Zm00001d009057_P001	EnsemblPlants:Zm00001d009057_T001	SEG:seg	:	:

Description

Pectin lyase-like superfamily protein

Coordinates

chr8:+:33664994..33667211

Molecular Weight (calculated)

44153.7 Da

IEP (calculated)

6.091

GRAVY (calculated)

-0.053

Length

423 amino acids

Sequence
(BLAST)

001: MEFTVVRTAI VLLLSLAVSS TFLCGGVQGG RHYHYHHTTH TKHNTAHPPS AHAPGPASGR RLPPVSPPPS DSSGYPTPGA APEPAPAPAA AGTMYDVVKD
101: FGAVGDGVTD DTDALKTAWD TACQDDGDSV VLAAAGYSFL VHTTVFTGPC QGSVTIQALR FFMTNNVTVQ GLKVQNSPEF HIRFDSCCGV VASGLSISSP
201: ALSPNTDGIH VENTEDVLIT NTAVSNGDDC VSIGAGTRNM HVENVTCGPG GHGISIGSLG KQGSRACVAN VTVRNAVIRH SDNGVRIKTW QGGSGAVSSV
301: SFENVRMDAV RNPIIIDQYY CLSKSCDNAT SAVFVSGVSY AGIRGTYDPR TTPIHFGCSD AVPCTNITLS DVELLPASGD STIDNPFCWN VYGSTATPTV
401: PPVPCLIEGV PRRVDDNSTL KCY

Best Arabidopsis Sequence Match ( AT1G02460.1 )
(BLAST)

001: MLTSTYNRNQ VLGFMTLILT LMSLSEARNH HHKEKHKHNN HNHHSSKPKP PSSSISQPPT PPPGPPDSPA PSLPPSPSDD PADDNNGIYN VRKYGAVGDG
101: ETDDTEAFKT AWDSSCNNEN NTDSVLLVPY GYTFMIQSTI FTGPCRSYQF FQVDGTIVTP DGPESWPSNI SKRQWLVFYR VNGMALKGEG VIDGRGQKWW
201: DLPCKPHRSV NKSAIVTGPC DSPIALRFFM SSNLRVEGLQ IKNSPQFHFR FDGCQGVHVE SLHITAPPLS PNTDGIHIEN SNSVTIYNSI ISNGDDCVSI
301: GSGSYDVDIR NLTCGPGGHG ISIGSLGNHN SRACVSNITV RDSVIKYSDN GVRIKTWQGG SGSVSGVTFN NIHVDSVRNP IIIDQYYCMT KDCANKTSAV
401: FVSDIAYQGI KGTYDIRSPP MHFGCSDAVP CTNLTLSDIE LLPAKGEIVL DPFCWNAYGI AEELSIPPVW CLMSDPPKGL QGSLVDKCGS S

Arabidopsis Description

At1g02460 [Source:UniProtKB/TrEMBL;Acc:Q9FWX5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.