Factsheet for Zm00001d038874_P002

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18597	Sorghum	extracellular	90.05	90.93
TraesCS1B01G382200.2	Wheat	extracellular	77.91	77.54
TraesCS1A01G364800.2	Wheat	extracellular	77.67	77.29
TraesCS1D01G370300.3	Wheat	extracellular	76.7	76.89
Os05t0542800-02	Rice	extracellular	76.7	74.18
Zm00001d038875_P001	Maize	extracellular	52.18	45.65
GSMUA_Achr3P13670_001	Banana	extracellular	47.57	43.08
CDY54312	Canola	extracellular	45.63	42.34
Bra003555.1-P	Field mustard	extracellular	45.87	42.28
CDY57689	Canola	extracellular	45.63	42.06
VIT_09s0002g06380.t01	Wine grape	cytosol	42.23	42.03
KRH09752	Soybean	extracellular	46.12	41.48
AT1G80170.1	Thale cress	extracellular	44.66	41.44
Solyc06g068040.2.1	Tomato	nucleus	43.93	41.42
Solyc03g116500.2.1	Tomato	nucleus	44.9	40.93
PGSC0003DMT400001638	Potato	extracellular, plastid	44.17	40.53
Zm00001d034552_P001	Maize	extracellular	39.32	36.73
Zm00001d034551_P001	Maize	extracellular	38.35	36.24
Zm00001d015129_P001	Maize	mitochondrion	43.93	35.08
Zm00001d034559_P001	Maize	extracellular	40.29	34.95
Zm00001d013032_P001	Maize	extracellular	41.26	34.91
Zm00001d048079_P001	Maize	extracellular	38.59	34.42
Zm00001d045974_P001	Maize	extracellular	33.25	32.7
Zm00001d011156_P001	Maize	plastid	34.47	32.57
Zm00001d040589_P001	Maize	extracellular	39.32	32.46
Zm00001d009057_P001	Maize	extracellular	33.25	32.39
Zm00001d040725_P002	Maize	extracellular, vacuole	38.84	31.87
Zm00001d039668_P001	Maize	plastid	33.5	31.58
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	35.92	28.68
Zm00001d044110_P001	Maize	extracellular	36.41	27.68
Zm00001d011444_P002	Maize	extracellular	36.16	27.54
Zm00001d009167_P001	Maize	extracellular	38.84	20.89

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1D6MBI8	ProteinID:AQK88130.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	InterPro:PbH1
InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI00084560F3
EnsemblPlantsGene:Zm00001d038874	EnsemblPlants:Zm00001d038874_P002	EnsemblPlants:Zm00001d038874_T002	SEG:seg	:	:

Description

Probable polygalacturonase

Coordinates

chr6:+:166206492..166209003

Molecular Weight (calculated)

43664.2 Da

IEP (calculated)

7.809

GRAVY (calculated)

-0.039

Length

412 amino acids

Sequence
(BLAST)

001: MAKAVPSPLA AVAVLALLLL CRGAEARVLL TLDDFGGVGD GIANDTQALL DAWAAACSST QEAVLAVPAG KVYQIWPVQL SGPCKKRLKL LISGAIVAPS
101: SPDEWAGRDP MKWLYVYGVD GLSVSGGGTI DGMGQQWWAS TCKRKKTQPC YSGPRPKAVH FEECREVSVQ GVTLQNAQQF QLTFTRCSCV KASFLRVVAP
201: ADSPNTDGIH LNDTSHVRIT DNLISTGDDC VSMVGNCSDV RVKDISCGPG HGISIGSLGK NRTTDMVEDV KVDTCLLTNT TNGVRIKSWQ GGTGFARDLR
301: FENIVMRNVS NPIIIDQYYC DQPTPCANQA RHSSTQAVEV RRVEFAGIRG TSATPQAISI ACSDAVPCRD LELANVNLTL EGGGAGRATA LCYRASGKSA
401: GTVVPPSCLA RS

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.