Factsheet for PGSC0003DMT400001638

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular

Predictor Summary:

plastid 5
vacuole 3
extracellular 4
plasma membrane 3
endoplasmic reticulum 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g116500.2.1	Tomato	nucleus	95.32	94.69
VIT_09s0002g06380.t01	Wine grape	cytosol	51.45	55.8
CDY54312	Canola	extracellular	52.56	53.15
Bra003555.1-P	Field mustard	extracellular	52.56	52.8
CDY57689	Canola	extracellular	52.56	52.8
AT1G80170.1	Thale cress	extracellular	52.12	52.7
KRH09752	Soybean	extracellular	51.67	50.66
GSMUA_Achr3P13670_001	Banana	extracellular	50.56	49.89
Os05t0542800-02	Rice	extracellular	42.54	44.84
EES18597	Sorghum	extracellular	40.53	44.61
Zm00001d038874_P002	Maize	extracellular	40.53	44.17
TraesCS1D01G370300.3	Wheat	extracellular	40.31	44.04
TraesCS1B01G382200.2	Wheat	extracellular	40.31	43.72
TraesCS1A01G364800.2	Wheat	extracellular	39.87	43.24
PGSC0003DMT400080722	Potato	extracellular	42.54	41.52
PGSC0003DMT400056828	Potato	extracellular	36.3	40.95
PGSC0003DMT400055713	Potato	extracellular	41.65	40.83
TraesCS1D01G370700.1	Wheat	extracellular	38.08	40.81
PGSC0003DMT400008955	Potato	extracellular	31.63	40.8
TraesCS1B01G382700.1	Wheat	extracellular	37.64	40.33
PGSC0003DMT400070039	Potato	cytosol	36.53	40.0
PGSC0003DMT400017691	Potato	extracellular	30.96	39.6
Os05t0542900-01	Rice	extracellular	38.98	39.33
HORVU3Hr1G006180.2	Barley	extracellular	37.42	39.07
TraesCS3B01G020300.1	Wheat	extracellular	38.53	39.05
TraesCS1D01G370800.1	Wheat	extracellular	37.64	38.94
TraesCS1B01G382800.1	Wheat	extracellular	37.64	38.94
HORVU1Hr1G079130.2	Barley	extracellular	37.64	38.94
TraesCS1A01G365300.1	Wheat	extracellular	37.64	38.85
TraesCS3A01G024500.1	Wheat	extracellular	37.86	38.46
PGSC0003DMT400007095	Potato	cytosol	36.97	38.16
PGSC0003DMT400013344	Potato	extracellular	39.87	37.92
TraesCS3D01G021700.1	Wheat	extracellular	37.19	37.87
TraesCS1A01G365200.1	Wheat	extracellular	38.08	37.25
Zm00001d038875_P001	Maize	extracellular	38.31	36.52
KXG22449	Sorghum	extracellular, golgi	37.64	36.11
HORVU1Hr1G079140.6	Barley	plastid	38.31	35.17
PGSC0003DMT400077010	Potato	cytosol	35.86	34.77
PGSC0003DMT400035162	Potato	extracellular	38.31	33.66
PGSC0003DMT400035101	Potato	extracellular, golgi	34.74	32.43
PGSC0003DMT400075723	Potato	extracellular	34.97	32.3

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005575
GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	UniProt:M0ZIU6
PFAM:PF00295	EnsemblPlantsGene:PGSC0003DMG400000608	PGSC:PGSC0003DMG400000608	EnsemblPlants:PGSC0003DMT400001638	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF91	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126
TMHMM:TMhelix	UniParc:UPI000296E565	SEG:seg	:	:	:

Description

Polygalacturonase [Source:PGSC_GENE;Acc:PGSC0003DMG400000608]

Coordinates

chr3:+:56361474..56366007

Molecular Weight (calculated)

48945.1 Da

IEP (calculated)

8.524

GRAVY (calculated)

-0.086

Length

449 amino acids

Sequence
(BLAST)

001: MASSFISSFN FSSYSTSVAL FASLYSLYFL LISANVSGFE SLLQLLPASA SLRSKSESLF QVNDFGAAGD GITDDTKSFK DVWDMACSSP SHAKIVIPAG
101: YSFLVRHINF AGPCRSKVSI RIAGTILAPK DPEVWDDLNP RKWLYFFRVK HLTVEGGGII NGMGQEWWAR SCKVNRTNPC HHAPTALTFH KCNNLKIKNI
201: KIFNSQQMHL AFTGCKHVTV SQLVVKAPGD SPNTDAIHIS SSTQVNVKDC TIGTGDDCIS IVGNSSRIKV KNIVCGPGHG ISIGSLGKSN SFSQVYNVHV
301: NGASISNTEN GVRIKTWQGG SGFVKKVSFE NVWMENVSNP IIIDQYYCDS TKPCSNKTSN IRIDSISFMG IKGTSATERA VTLACSDSFP CRKLYLEDIQ
401: LTSSSGDPAT FFCWQAYGTT SGLNYPPPCF PCNDGILQPK FLSNWSQSI

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.