Factsheet for Os05t0542800-02

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G382200.2	Wheat	extracellular	77.46	79.71
TraesCS1D01G370300.3	Wheat	extracellular	76.29	79.08
TraesCS1A01G364800.2	Wheat	extracellular	76.29	78.5
Zm00001d038874_P002	Maize	extracellular	74.18	76.7
EES18597	Sorghum	extracellular	72.54	75.74
Os05t0542900-01	Rice	extracellular	52.11	49.89
VIT_09s0002g06380.t01	Wine grape	cytosol	41.55	42.75
Solyc03g116500.2.1	Tomato	nucleus	45.31	42.7
KRH09752	Soybean	extracellular	45.77	42.58
CDY54312	Canola	extracellular	44.37	42.57
PGSC0003DMT400001638	Potato	extracellular, plastid	44.84	42.54
CDY57689	Canola	extracellular	44.6	42.51
Solyc06g068040.2.1	Tomato	nucleus	43.43	42.33
Bra003555.1-P	Field mustard	extracellular	44.37	42.28
GSMUA_Achr3P13670_001	Banana	extracellular	45.07	42.2
Os01t0296200-00	Rice	extracellular	25.35	40.6
AT1G80170.1	Thale cress	extracellular	42.25	40.54
Os05t0279900-00	Rice	cytosol	28.64	38.73
Os05t0578600-01	Rice	cytosol, extracellular	27.7	37.82
Os01t0637500-00	Rice	cytosol, extracellular	28.87	36.39
Os03t0216800-01	Rice	extracellular	36.85	35.84
Os03t0808000-00	Rice	extracellular	38.26	35.28
Os02t0130200-01	Rice	extracellular, golgi	41.31	34.65
Os01t0549000-00	Rice	extracellular	22.3	33.45
Os01t0172900-00	Rice	nucleus	20.89	30.17
Os01t0636500-01	Rice	extracellular	35.21	27.88
Os01t0329300-01	Rice	plastid	37.09	20.82

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4339483	MapMan:50.3.2	ProteinID:AAU43991.1	EMBL:AK071271	EMBL:AK105858
ProteinID:BAS95144.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os05g0542800
EnsemblPlants:Os05t0542800-02	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	UniProt:Q65XN6	SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI000043F3F8	RefSeq:XP_015640423.1
SEG:seg	:	:	:	:	:

Description

Pectin lyase fold/virulence factor domain containing protein. (Os05t0542800-01);Similar to polygalacturonase. (Os05t0542800-02);Similar to polygalacturonase. (Os05t0542800-03)

Coordinates

chr5:+:26940356..26943170

Molecular Weight (calculated)

45268.5 Da

IEP (calculated)

8.345

GRAVY (calculated)

-0.012

Length

426 amino acids

Sequence
(BLAST)

001: MAILRVSVMR LVVAAMAVAA GVLFFSGAGE ARVLLTLDDF GAVGDGITND TQAFLDAWNA ACASTEPAVL AVPAGKTYQI WPVRLAGPCK KKLKLMISGT
101: IAAPASPDEW AGRDPTKWLY VFRVDDLSVS GGGTIDGMGA EWWARSCKRK KTKPCSTVSA PKALQFEECR RVSVQGITMQ NGPQFHLMFT RCTDVKASFL
201: RVVAPESSPN TDGIHLNDTT HAQIMDNLIS TGDDCVSMVG NCSDVRVKDI SCGPGHGISI GSLGKNRTTD RIENVRVDTC LLTNTTNGVR IKSWQGGMGY
301: AHNLRFEGIV MKNVSNPIII DQYYCDQPTP CANQTQAVEV RKIEFAGIRG TSATEQAIKL ACSDAVPCRD LELRNVNLTM VGGGAASAFC HRASGKAAGA
401: VVPASCLAKA PHRMLGDATP AARVGS

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.