Factsheet for Os01t0549000-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32718	Sorghum	extracellular	80.63	52.52
Zm00001d011156_P001	Maize	plastid	79.58	51.83
Os01t0296200-00	Rice	extracellular	41.9	44.74
Os05t0578600-01	Rice	cytosol, extracellular	45.77	41.67
Os01t0637500-00	Rice	cytosol, extracellular	49.3	41.42
GSMUA_Achr1P12720_001	Banana	extracellular	58.1	40.24
Os05t0279900-00	Rice	cytosol	41.9	37.78
KRH74551	Soybean	extracellular	55.99	34.49
KRH69612	Soybean	extracellular	55.63	34.2
AT3G26610.1	Thale cress	extracellular	54.93	33.19
VIT_01s0127g00120.t01	Wine grape	extracellular	55.28	32.78
CDX83631	Canola	extracellular	53.87	32.48
Bra025216.1-P	Field mustard	extracellular	53.52	32.34
CDY13645	Canola	extracellular	53.52	32.34
Solyc05g005040.2.1	Tomato	extracellular	49.65	29.94
PGSC0003DMT400035101	Potato	extracellular, golgi	50.35	29.73
Os01t0636500-01	Rice	extracellular	49.65	26.21
Os05t0542800-02	Rice	extracellular	33.45	22.3
Os02t0130200-01	Rice	extracellular, golgi	39.79	22.24
Os03t0216800-01	Rice	extracellular	32.39	21.0
Os03t0808000-00	Rice	extracellular	32.75	20.13
Os05t0542900-01	Rice	extracellular	30.99	19.78
Os01t0329300-01	Rice	plastid	44.72	16.73
Os01t0172900-00	Rice	nucleus	10.56	10.17

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A0P0V3U1	ProteinID:BAS72619.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009653	GO:GO:0009826	GO:GO:0009987	GO:GO:0016043
GO:GO:0016049	GO:GO:0016787	GO:GO:0016798	GO:GO:0040007	GO:GO:0045490	GO:GO:0048046
GO:GO:0052546	GO:GO:0060773	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os01g0549000
EnsemblPlants:Os01t0549000-00	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF92	InterPro:PbH1	InterPro:Pectin_lyas_fold
InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000393BC6A	:

Description

Similar to Polygalacturonase (Fragment). (Os01t0549000-00)

Coordinates

chr1:+:20487491..20488635

Molecular Weight (calculated)

30312.2 Da

IEP (calculated)

8.540

GRAVY (calculated)

-0.051

Length

284 amino acids

Sequence
(BLAST)

001: MTHLLLSFFC SFQLIRFYSS FNVSVRNIRI TNSPQCHLKF DSSGGIKVKN ITISSPGDSL NTDGIHLQNT RDVDIRSSSI GCGDDCISIQ TGCSNVHMKN
101: INCNPGHGIS LGGLGKDNSL ACVSDVFAEH INVENALYGV RIKTWQGGKG TVRNVTFSNV RVANVATPIA IDQFYCDAGG GGARCGNRSD AVGITGVAYR
201: RVAGTYTYQP VRLACSDARP CTGVSMADVR LSPASATGAG GLRQPLCWKS YGEAMGMIEP TGIACLQRSN GFVMPLTKPF NYTC

Best Arabidopsis Sequence Match ( AT3G26610.1 )
(BLAST)

001: MKTVKSLPIL AMLLGVIIVA AAISTVSVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP STNEGVFNIF SYGAKGDGVS DDSKALVGAW KAACKVVGGK
101: VEIPAGTQFL VKAVTLQGPC KEETVVQIEG ILVAPEKIGS WPNSSLFQWL NFKWVSHLTI QGSGTLNGRG YNWWNLDTYQ TQTRNKYIPP MKPTALRFYS
201: SNNVTVRDIS IVNSPLCHLK FDDSDGVKVN NITISSPENS PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HINCGPGHGI SIGGLGKDKS
301: VACVSDIIVE DISIQNTLAG VRIKTWQGGL GVVKNLTFSN IQVKDVKVPI VIDQYYCDKS KCKNQTRAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD
401: VDLMDIRLRP SGGIRGLQTH QQQQALCWNS YGKTQGPLVP SSIGYCLRKS NIGGYYSQKV SRSYDKICPS

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q38958]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.