Factsheet for Os05t0542900-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G079130.2	Barley	extracellular	64.94	66.59
TraesCS1A01G365300.1	Wheat	extracellular	64.49	65.98
TraesCS1D01G370800.1	Wheat	extracellular	64.27	65.9
TraesCS1B01G382800.1	Wheat	extracellular	64.04	65.67
TraesCS3A01G024500.1	Wheat	extracellular	62.47	62.9
TraesCS3D01G021700.1	Wheat	extracellular	61.35	61.9
TraesCS3B01G020300.1	Wheat	extracellular	61.12	61.4
HORVU3Hr1G006180.2	Barley	extracellular	57.75	59.77
KXG22449	Sorghum	extracellular, golgi	60.0	57.05
Zm00001d038875_P001	Maize	extracellular	60.0	56.69
Os05t0542800-02	Rice	extracellular	49.89	52.11
VIT_09s0002g06380.t01	Wine grape	cytosol	38.2	41.06
KRH09752	Soybean	extracellular	40.67	39.52
GSMUA_Achr3P13670_001	Banana	extracellular	40.0	39.12
PGSC0003DMT400001638	Potato	extracellular, plastid	39.33	38.98
Solyc03g116500.2.1	Tomato	nucleus	39.1	38.5
CDY54312	Canola	extracellular	37.75	37.84
AT1G80170.1	Thale cress	extracellular	37.53	37.61
Bra003555.1-P	Field mustard	extracellular	37.53	37.36
CDY57689	Canola	extracellular	37.53	37.36
Solyc06g068040.2.1	Tomato	nucleus	35.96	36.61
Os05t0279900-00	Rice	cytosol	25.17	35.56
Os01t0296200-00	Rice	extracellular	20.67	34.59
Os05t0578600-01	Rice	cytosol, extracellular	23.82	33.97
Os03t0216800-01	Rice	extracellular	32.81	33.33
Os01t0637500-00	Rice	cytosol, extracellular	25.17	33.14
Os03t0808000-00	Rice	extracellular	34.38	33.12
Os01t0549000-00	Rice	extracellular	19.78	30.99
Os02t0130200-01	Rice	extracellular, golgi	35.06	30.71
Os01t0172900-00	Rice	nucleus	17.3	26.1
Os01t0636500-01	Rice	extracellular	31.46	26.02
Os01t0329300-01	Rice	plastid	30.11	17.65

Protein Annotations

Gene3D:2.160.20.10	EntrezGene:4339484	MapMan:50.3.2	ProteinID:AAU43993.1	EMBL:AK102925	ProteinID:BAF18113.1
ProteinID:BAS95145.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlantsGene:Os05g0542900
EnsemblPlants:Os05t0542900-01	PFAM:PF00295	PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
UniProt:Q65XN4	SUPFAM:SSF51126	SignalP:SignalP-noTM	UniParc:UPI000043F3FA	RefSeq:XP_015640422.1	SEG:seg

Description

Pectin lyase fold domain containing protein. (Os05t0542900-01)

Coordinates

chr5:+:26943380..26945786

Molecular Weight (calculated)

46743.1 Da

IEP (calculated)

6.107

GRAVY (calculated)

-0.171

Length

445 amino acids

Sequence
(BLAST)

001: MPPSSRMAPP PLAGVVVVAA ALLLLLPEAA EPRTLLSLDD FGAVGDGVAN DTQALVDAWS AACATGDHTF LHVPAAKSYL VWPVTLAGPC REEIKLFISG
101: NIVAPESPDE WPEGGGGGGE WLHFVGVSDL TLSGGGVIDG RGHRWWARSC KAKHNATENC TTQAAPKALH FEDCQGISVM GITLQNSQES HLTFTRCSHV
201: KANYLRITSP EDSPDTTGVH VVSSRNVHIM DDSISTGHDC VSIVGNSTDV RLRAISCGPG HGISIGGLGE NRSYHRVEKI KMDTLFISNT ENGVRVKTFQ
301: GGCGTARKMK FGDILMKNVK NPIVIDQQNS SSNEIPCGSK NGSAVTVGEI SYTDITGTSA SERAVTFACS EAAPCSKLSL ENVNITMAGG QNASAYCHHA
401: FGKSVGVVVP DSCLGKEDYL RRQVPASAAA AGGGTQEKGG EDDDR

Best Arabidopsis Sequence Match ( AT1G80170.1 )
(BLAST)

001: MSYSRGGTLV TLLLLLVVAS SLALTANANS FESLLQLPRR QSRSTRPRSE RLLHVGNFGA KGNGVTDDTK AFADAWKTAC SSKVKTRILV PENYTCLLRP
101: IDLSGPCKAR LTLQISGTII APNDPDVWEG LNRRKWLYFH GLSRLTVEGG GTVNGMGQEW WERSCKHNHS NPCRGAPTAL TFHKCKNMRV ENLNVIDSQQ
201: MHIALTSCRR VTISGLKVIA PATSPNTDGI HISVSRGIVI DNTTVSTGDD CISIVKNSTQ ISISNIICGP GHGISIGSLG KSKSWEEVRD ITVDTAIISD
301: TANGVRIKTW QGGSGLVSKI IFRNIKMNNV SNPIIIDQYY CDSRKPCANQ TSAISIENIS FVHVRGTSAS KEAIKISCSD SSPCRNILLQ DIDLEPSNGD
401: GFTESFCWEA YGSSSGQVYP PPCLSDDTSF LEQSVQSGIT SAYL

Arabidopsis Description

Probable polygalacturonase At1g80170 [Source:UniProtKB/Swiss-Prot;Acc:Q94AJ5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.