Factsheet for TraesCS1B01G382800.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
golgi 4
plasma membrane 4
endoplasmic reticulum 4
vacuole 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G370800.1	Wheat	extracellular	96.77	96.77
TraesCS1A01G365300.1	Wheat	extracellular	95.16	94.94
HORVU1Hr1G079130.2	Barley	extracellular	91.71	91.71
TraesCS3B01G020300.1	Wheat	extracellular	85.48	83.75
Os05t0542900-01	Rice	extracellular	65.67	64.04
TraesCS1B01G382700.1	Wheat	extracellular	57.83	59.9
Zm00001d038875_P001	Maize	extracellular	60.6	55.84
KXG22449	Sorghum	extracellular, golgi	59.45	55.13
TraesCS1B01G382200.2	Wheat	extracellular	50.69	53.14
KRH09752	Soybean	extracellular	41.24	39.08
VIT_09s0002g06380.t01	Wine grape	cytosol	36.18	37.92
Solyc03g116500.2.1	Tomato	nucleus	39.4	37.83
PGSC0003DMT400001638	Potato	extracellular, plastid	38.94	37.64
CDY54312	Canola	extracellular	38.25	37.39
Bra003555.1-P	Field mustard	extracellular	38.02	36.91
CDY57689	Canola	extracellular	38.02	36.91
GSMUA_Achr3P13670_001	Banana	extracellular	38.48	36.7
AT1G80170.1	Thale cress	extracellular	37.1	36.26
Solyc06g068040.2.1	Tomato	nucleus	36.18	35.93
TraesCS2B01G423400.1	Wheat	plastid	28.11	34.76
TraesCS2B01G423300.1	Wheat	extracellular	31.8	34.41
TraesCS5B01G468700.1	Wheat	extracellular	32.49	34.39
TraesCS7B01G067800.1	Wheat	extracellular	32.95	34.05
TraesCS5B01G469000.1	Wheat	extracellular	31.8	33.99
TraesCS1B01G083700.1	Wheat	extracellular	23.5	33.77
TraesCS5B01G468900.1	Wheat	extracellular	32.03	33.17
TraesCS4B01G244300.1	Wheat	extracellular	32.95	33.03
TraesCS2B01G423200.1	Wheat	extracellular	32.03	32.71
TraesCS1B01G142700.1	Wheat	plastid	32.26	31.82
TraesCS1B01G322500.1	Wheat	extracellular	34.56	30.99
TraesCS6B01G118000.2	Wheat	extracellular, golgi, vacuole	36.18	29.73
TraesCS3B01G148600.1	Wheat	extracellular	28.11	29.61
TraesCS3B01G148500.1	Wheat	extracellular	26.73	28.93
TraesCS7B01G230600.1	Wheat	extracellular	30.18	26.9
TraesCS1B01G448100.1	Wheat	extracellular	31.8	26.04
TraesCS3B01G258600.2	Wheat	extracellular	31.34	25.33

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_28	InterPro:IPR012334	PFAM:PF00295
PANTHER:PTHR31375	PANTHER:PTHR31375:SF4	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SUPFAM:SSF51126	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G382800	EnsemblPlants:TraesCS1B01G382800.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:614967975..614969826

Molecular Weight (calculated)

45970.1 Da

IEP (calculated)

4.643

GRAVY (calculated)

-0.088

Length

434 amino acids

Sequence
(BLAST)

001: MALLARATLL LAALAGAVAL LLPGAAEARV LLSLDDFGAV GDGIANDTQA FVDAWEAACA TGGNTYLNVP AGKSYQIWPV TLAGPCRGEI KLLISGNIVA
101: PESPEEWEDG DQGRWLHFSG VGDLSLSGGG IVDGRGQQWW AGACEDENCT SYRQREVAPM ALHFEDCQDV SVKGLTLQNS QRQHLVFTRC YNVEANYLRV
201: TSPEYSPGTA GVLVVSSTNV HIKNDLFSVG GDCVSIVGNC SDVRLRAISC GPGLGISIGG LGENQSSHKI EKIKTDTMFI SNTKNGVRVK TYEDGCGFAR
301: KVKFAQIMMR NVANPIVIDQ HYSAANRGTQ CGAPNGSAVA VENINYIDIT GTSATERAVT FACSDAMPCR RLYLDGVNLT TSGGGSTSAY CHQAFGKHVG
401: DVLPESCLGK EDFVQLQAAP TTGDAQEDED AADW

Best Arabidopsis Sequence Match ( AT1G23460.1 )
(BLAST)

001: MMDKLFILSL LGLLLVTAYG AAGKMVYTDL DILDELENFD VLVDDDDDTK LLDWPSFTSR HSGKNLVNVD TFGAAGDGVS DDTQAFVSAW SKACSTSKSV
101: FLVPEGRRYL VNATKFNGPC EQKLIIQIDG TIVAPDEPSN WDSKFQRIWL EFSKLKGVVF QGKGVIDGSG SKWWAASCKK NKSNPCKSAP TALTIESSSG
201: VKVSGLTIQN SQQMNFIIAR SDSVRVSKVM VSSPGDSPNT DGIHITGSTN VILQDCKIGT GDDCVSIVNA SSNIKMKNIY CGPGHGISIG SLGKDNTTGI
301: VTQVVLDTAL LRETTNGLRI KTYQGGSGYV QGIRFTNVEM QDVANPILID QFYCDSPTTC QNQTSAVKIS QIMYRNITGT TKSAKAIKFA CSDTVPCSHI
401: VLNNVNLEGN DGQVEAYCNS AEGFGYGVIH PSADCLYSHD DKGLDQTHKS EEAETGHDEL

Arabidopsis Description

Pectin lyase-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4I672]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.