Factsheet for Zm00001d009167_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32426	Sorghum	extracellular	77.28	85.55
Zm00001d040725_P002	Maize	extracellular, vacuole	53.52	81.67
GSMUA_Achr8P06220_001	Banana	extracellular	38.25	62.61
Os01t0329300-01	Rice	plastid	58.36	58.89
VIT_05s0020g00420.t01	Wine grape	extracellular	36.16	58.07
PGSC0003DMT400075723	Potato	extracellular	35.38	55.76
Solyc04g008230.2.1	Tomato	nucleus	35.51	55.51
CDY43307	Canola	extracellular	34.2	55.39
Bra018707.1-P	Field mustard	extracellular	33.94	55.08
CDX93644	Canola	extracellular	33.94	55.08
KRH36916	Soybean	extracellular, nucleus	34.07	55.06
KRH42407	Soybean	extracellular	34.6	54.75
AT1G48100.1	Thale cress	extracellular	33.94	54.74
KRH58524	Soybean	extracellular	34.99	54.69
KRH11881	Soybean	extracellular	33.94	54.28
Zm00001d040589_P001	Maize	extracellular	32.51	49.9
Zm00001d009057_P001	Maize	extracellular	26.89	48.7
Zm00001d011156_P001	Maize	plastid	22.45	39.45
Zm00001d038874_P002	Maize	extracellular	20.89	38.84
Zm00001d045974_P001	Maize	extracellular	21.02	38.42
Zm00001d009667_P001	Maize	extracellular, mitochondrion, plastid	24.54	36.43
Zm00001d011444_P002	Maize	extracellular	25.33	35.86
Zm00001d044110_P001	Maize	extracellular	25.2	35.61
Zm00001d034552_P001	Maize	extracellular	20.23	35.15
Zm00001d034551_P001	Maize	extracellular	19.84	34.86
Zm00001d015129_P001	Maize	mitochondrion	21.93	32.56
Zm00001d013032_P001	Maize	extracellular	20.63	32.44
Zm00001d039668_P001	Maize	plastid	18.41	32.27
Zm00001d048079_P001	Maize	extracellular	19.32	32.03
Zm00001d034559_P001	Maize	extracellular	19.84	32.0
Zm00001d038875_P001	Maize	extracellular	18.54	30.15

Protein Annotations

EntrezGene:103635108	Gene3D:2.160.20.10	MapMan:50.3.2	ProteinID:AQK91442.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28
InterPro:IPR012334	UniProt:K7VC52	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF30
InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	SUPFAM:SSF51126	TMHMM:TMhelix
UniParc:UPI0002212103	EnsemblPlantsGene:Zm00001d009167	EnsemblPlants:Zm00001d009167_P001	EnsemblPlants:Zm00001d009167_T001	SEG:seg	:

Description

Polygalacturonase

Coordinates

chr8:+:40630094..40633047

Molecular Weight (calculated)

79730.8 Da

IEP (calculated)

9.115

GRAVY (calculated)

-0.293

Length

766 amino acids

Sequence
(BLAST)

001: MPPATSTRPP FRRPVPLLTV VVSVALLSLV CFLVAADASR SLHYHYHLRK HRRHHGHHRA ENYSHISLPP AAPPPGADGD SPAGPVGLPP DVGGALPPSS
101: CSDKPCPLSP SPSRAPAGAP CSTPGSAKPP ALTLATPPSP APATPPSHSP PNPPSSHQPF QRPTLPLAKA PPSSKPPSPD IAPFHPHAKP PRALPDAKSP
201: SQPPKRAPAP SPLSPSKPRK PPSCTLATPP QAQTSRLAPA SAKPPMRSPA HPPKLSPASP LAHPPVEPPK SALAKPPGFS FSHTTKPQPP VASMVKPPRL
301: APAKPPAPSP LPAAQPPRCS TANPPVAPTA SAKPPAYPPA AASKPIPPPP LPPAANNSSS AWGNVFDVRA FGASGSGSGN DTRALRAAWK AACSSNSTTP
401: TLLVPSDGVF TISSTIFAGP CKSAVTFQID GVLMPPDGPA SWPASDSRKQ WIVFYKANGM TLAGEGTIEG NGEEWWDLPC KPHRGPNGST LPGPCDSPAL
501: VRFFLSNDVT VRGLRIENSP QFHLKFDDCE RVRVDGLFVR SPAFSPNTDG VHVENTTSVQ ILNSRIYNGD DCVSIGAGCS DVRIENITCG HGHGISIGSL
601: GVHGTRACVS NITVRNARIL DSDNGVRIKT WQGGTGAVTA VEFAGVQMQN VKNCILIDQY YCLGSGCANL SSAVRVAGVT YRDIRGTYNP QASAPIRLAC
701: SDAVACTDIT MSGVELLPAS GGGARALLAD PYCWNAYGVM ETLTLPPVYC LQEGRPESLQ DQLTSC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.