CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 2
extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	extracellular
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG32428	Sorghum	mitochondrion	61.71	82.12
Zm00001d009167_P001	Maize	extracellular	85.55	77.28
GSMUA_Achr8P06220_001	Banana	extracellular	41.91	61.97
VIT_05s0020g00420.t01	Wine grape	extracellular	40.46	58.7
Os01t0329300-01	Rice	plastid	62.57	57.05
KRH42407	Soybean	extracellular	39.16	55.99
PGSC0003DMT400075723	Potato	extracellular	39.31	55.97
Solyc04g008230.2.1	Tomato	nucleus	39.6	55.92
KRH36916	Soybean	extracellular, nucleus	38.29	55.91
KRH58524	Soybean	extracellular	39.45	55.71
CDY43307	Canola	extracellular	37.72	55.18
AT1G48100.1	Thale cress	extracellular	37.72	54.95
Bra018707.1-P	Field mustard	extracellular	37.43	54.87
CDX93644	Canola	extracellular	37.43	54.87
KRH11881	Soybean	extracellular	37.86	54.7
EES00620	Sorghum	extracellular	35.4	48.42
KXG32718	Sorghum	extracellular	25.58	40.6
EES18597	Sorghum	extracellular	22.98	38.97
EES20001	Sorghum	extracellular	28.03	36.13
EES01142	Sorghum	extracellular	27.75	36.09
EER93240	Sorghum	extracellular	23.55	36.06
EER90686	Sorghum	plastid	22.4	35.55
KXG39856	Sorghum	extracellular	21.68	34.88
KXG26899	Sorghum	extracellular	20.81	34.29
EER90681	Sorghum	extracellular	22.98	34.05
EES04449	Sorghum	extracellular	25.0	33.27
KXG31745	Sorghum	extracellular	19.51	31.32
KXG22449	Sorghum	extracellular, golgi	20.09	29.7

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1B6Q3C1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
EnsemblPlants:KXG32426	ProteinID:KXG32426	ProteinID:KXG32426.1	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF30	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	EnsemblPlantsGene:SORBI_3003G153100
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI00081ACE55	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:16331922..16335887

Molecular Weight (calculated)

71621.2 Da

IEP (calculated)

7.804

GRAVY (calculated)

-0.292

Length

692 amino acids

Sequence
(BLAST)

001: MPPSTSTRPQ LHCPVPLLTT VVSMALLCFL VVVGADASRS LHCHRKHQRH HHGHHRTENY SHVSMPPVAP PPDVDGDSPA EPPGLPPAVG GALPPCSCHD
101: KPCLSPIKEP AGAPSTTPTS SAKPPHFSLA NPPSPAPATA PSHSPLNPPS SHQAPSKPPA SSLAKPPSSA PVPDIAPSHS HAKPPSSYAT RTPSQPPKRA
201: PEPAHPPAES KAPRLAPAKQ PPAPSPSPSA AQPPRCSTAN HPSLAPTASA KPPAHPPAAA SKPIPPPPPA LPPAAKNSSS GWGNVFDVRA FGASGNASGN
301: DTRAFRAAWK AACSSNTTTA TLLVPSDGVF TISSTIFAGP CKSALTFQID GVLMPPDGPA SWPASDSRKQ WIVFYKADGM TLAGEGTIEG NGEEWWDLPC
401: KPHRGPNGST LPGPCDSPAL VRFFSSNDVA VRGLRIENSP QFHLKFDACD RVRVDGLFVS SPASSPNTDG VHVENTTSVQ ILNSRIYNGD DCVSIGAGCS
501: DVHIENITCG HGHGISIGSL GVHNTRACVS NVTVRNARIV DSDNGVRIKT WQGGTGAVSA VEFAGVQMQN VKNCIVIDQY YCLGSGCANQ TSAVRVAGVT
601: YRDIRGTYNP QAAGAPIRLA CSDAVACTDI TMSGVELLPA SGGGGGGGRA GALLADPYCW NAYGVMETLT LPPVYCLQEG RPESLQDQLT SC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.