CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
extracellular 1
mitochondrion 3
nucleus 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d040725_P002	Maize	extracellular, vacuole	89.62	92.83
KXG32426	Sorghum	extracellular	82.12	61.71
GSMUA_Achr8P06220_001	Banana	extracellular	54.04	60.04
VIT_05s0020g00420.t01	Wine grape	extracellular	51.92	56.6
CDY43307	Canola	extracellular	50.0	54.97
Bra018707.1-P	Field mustard	extracellular	49.81	54.87
CDX93644	Canola	extracellular	49.81	54.87
AT1G48100.1	Thale cress	extracellular	50.0	54.74
KRH42407	Soybean	extracellular	50.38	54.13
PGSC0003DMT400075723	Potato	extracellular	50.38	53.91
KRH36916	Soybean	extracellular, nucleus	49.04	53.8
Solyc04g008230.2.1	Tomato	nucleus	50.58	53.67
KRH58524	Soybean	extracellular	50.38	53.47
KRH11881	Soybean	extracellular	48.65	52.82
Os01t0329300-01	Rice	plastid	67.69	46.38
EES00620	Sorghum	extracellular	42.31	43.48
KXG32718	Sorghum	extracellular	32.69	38.99
EES18597	Sorghum	extracellular	29.81	37.99
EER90686	Sorghum	plastid	29.81	35.55
KXG26899	Sorghum	extracellular	28.27	35.0
EER93240	Sorghum	extracellular	30.38	34.96
KXG39856	Sorghum	extracellular	28.85	34.88
EES20001	Sorghum	extracellular	35.0	33.89
EES01142	Sorghum	extracellular	34.62	33.83
EER90681	Sorghum	extracellular	29.62	32.98
EES04449	Sorghum	extracellular	31.92	31.92
KXG31745	Sorghum	extracellular	26.15	31.55
KXG22449	Sorghum	extracellular, golgi	25.38	28.21

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A1B6Q3C4	GO:GO:0003674	GO:GO:0003824	GO:GO:0004650
GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555	InterPro:Glyco_hydro_28	InterPro:IPR012334
EnsemblPlants:KXG32428	ProteinID:KXG32428	ProteinID:KXG32428.1	PFAM:PF00295	ScanProsite:PS00502	PANTHER:PTHR31375
PANTHER:PTHR31375:SF30	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence	SMART:SM00710	EnsemblPlantsGene:SORBI_3003G153200
SUPFAM:SSF51126	TMHMM:TMhelix	UniParc:UPI00081AD889	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:16371441..16374574

Molecular Weight (calculated)

55147.6 Da

IEP (calculated)

4.902

GRAVY (calculated)

-0.260

Length

520 amino acids

Sequence
(BLAST)

001: MMRPAPETST RPQLRRRRRP RPVPLVTVVV SVALVSLLCL PVAADASRAL HHNNREQHRG HQNHRTTENK KNSHVSLPPD ADGGDSPPEP PEADGGAPPP
101: PLPPPPPEGD DDCGDVFDVR AFGASGGDGG SCGDDDTPAF RAAWKAACSS DSATATLLVP SDGVFTITST IFSGPCKPDL TFQIDGVLMP PDGPASWPAT
201: DSRKQWIVFY KADRLTLAGE GTIEGNGEEW WDLPCKPHRG PNGSTLPGPC DSPALIRFFL SNDVTVCGLR IENSPQFHLR FDDCERVRVD GLFVSSPASS
301: PNTDGVHVEN TTSVQILNSR IYNGDDCVSI GAGCSDVHVE NITCGHGHGI SIGSLGVHNT HACVSNITVR NARILDSDNG LRIKTWQGGT GAVTAVEFAG
401: VQMQNVKSCI VIDQYYCLGH GCANQTSAVR VAGVTYRDIH GTYNPQAGAP IRLACSDAVA CTDITMSGVE LLPAGGDEGA LLADPYCWNA YGVMETLTLP
501: PVYCLLEGSP ESLQDPLTSC

Best Arabidopsis Sequence Match ( AT1G48100.1 )
(BLAST)

001: MRRLSGILVI YIISTVLFGH FTNVARARYH YHKGRHGVTH PLPPPPPPPL ETANPPDQVP SDPYPSPDPA PGDSDSGCVF DVTSFGAVGD GSCDDTAAFQ
101: DAWKAACAVE SGVVLAPEGG VFKITSTIFS GPCKPGLVFQ LDGVLMPPDG PEEWPEKDNK NQWLVFYRLD GFTFSGKGTV EGNGQKWWDL PCKPHRGPDG
201: SSSSGPCASP TMIRFFMSNN IEVKGLRIQN SPQFHMKFDG CQGVLINEIQ ISSPKLSPNT DGIHLGNTRS VGIYNSVVSN GDDCISIGTG CSDVDIQGVT
301: CGPSHGISIG SLGVHNSQAC VSNITVRNTV IRDSDNGLRV KTWQGGTGSV SNLLFENIQM ENVLNCIIVD QYYCQSKDCR NETSAVKVFD VEYRNIKGTY
401: DVRSPPIHFA CSDTVACTNI TMSEVELLPE EGELVDDPFC WNAYGKQETL TIPPIDCLLD GSPVVEEAYD SNYGC

Arabidopsis Description

Polygalacturonase At1g48100 [Source:UniProtKB/Swiss-Prot;Acc:Q949Z1]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.