Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 7
  • endoplasmic reticulum 5
  • vacuole 5
  • plasma membrane 5
  • golgi 5
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
iPSORT:secretory
MultiLoc:extracellular
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025099.1-P Field mustard extracellular 98.5 98.25
CDY69377 Canola extracellular 94.49 94.25
CDY50769 Canola extracellular 77.19 90.06
CDY39399 Canola extracellular 88.22 88.0
CDX73440 Canola extracellular 86.22 86.0
AT5G44830.1 Thale cress extracellular 63.16 75.9
AT5G44840.1 Thale cress extracellular 73.43 74.94
CDX72553 Canola extracellular 57.64 57.07
CDY47032 Canola extracellular 57.14 56.58
CDX85471 Canola extracellular 43.36 42.61
PGSC0003DMT400056828 Potato extracellular 41.85 41.96
PGSC0003DMT400008955 Potato extracellular 36.09 41.38
CDY02729 Canola extracellular 43.36 40.42
CDY58462 Canola extracellular 45.36 39.96
CDX75843 Canola extracellular 45.11 39.74
TraesCS2D01G402100.1 Wheat extracellular 40.1 39.51
TraesCS2A01G405300.1 Wheat extracellular, nucleus 40.1 39.51
CDY30105 Canola extracellular 44.36 39.42
TraesCS2B01G423300.1 Wheat extracellular 39.6 39.4
CDY16952 Canola extracellular 42.86 39.4
CDY30107 Canola extracellular 44.86 39.25
CDX97704 Canola extracellular 44.86 39.25
CDX97703 Canola extracellular 44.36 39.16
HORVU2Hr1G096130.1 Barley extracellular 39.35 38.77
TraesCS2B01G423400.1 Wheat plastid 33.83 38.46
TraesCS2D01G402200.1 Wheat extracellular 37.59 38.36
TraesCS2A01G405600.1 Wheat extracellular 30.58 38.24
CDX69397 Canola extracellular 38.6 38.12
CDX68839 Canola cytosol 38.6 37.93
CDX75239 Canola cytosol 38.6 37.93
TraesCS2D01G402300.1 Wheat extracellular 31.58 37.84
CDY39884 Canola extracellular 42.11 37.75
TraesCS2A01G405100.1 Wheat extracellular 39.35 37.65
KXG26899 Sorghum extracellular 39.6 37.62
TraesCS2B01G423200.1 Wheat extracellular 39.35 36.94
CDY56952 Canola extracellular 38.85 36.82
CDX74418 Canola extracellular 38.6 36.49
GSMUA_Achr11P... Banana extracellular 37.84 36.3
TraesCS2D01G402000.1 Wheat extracellular 38.85 36.22
KRH05150 Soybean extracellular 24.31 36.06
GSMUA_Achr9P22320_001 Banana extracellular 37.09 35.84
CDY54312 Canola extracellular 39.1 35.14
CDY14791 Canola extracellular 37.84 34.87
CDY57689 Canola extracellular 38.85 34.68
CDY06902 Canola extracellular 37.59 34.64
CDY37571 Canola cytosol 32.33 34.49
GSMUA_Achr4P13200_001 Banana extracellular 36.34 34.36
CDY38648 Canola cytosol 32.08 34.22
CDY09873 Canola extracellular 37.59 34.17
CDX69569 Canola extracellular 37.34 33.94
CDX74019 Canola extracellular 37.09 33.87
CDX67693 Canola extracellular 36.59 33.72
CDX72025 Canola extracellular 36.34 33.56
CDX79907 Canola extracellular 36.59 33.56
CDY48768 Canola extracellular 36.59 33.56
CDY07963 Canola extracellular 36.84 33.56
CDY28005 Canola extracellular 35.09 33.25
CDY35976 Canola extracellular 35.09 33.25
Zm00001d039668_P001 Maize plastid 36.34 33.18
CDY04708 Canola plastid 22.81 32.85
CDY41695 Canola extracellular 34.09 31.26
CDY54292 Canola cytosol 34.84 31.17
CDY25786 Canola cytosol 34.59 30.94
CDX95284 Canola extracellular 30.83 30.45
CDY47139 Canola extracellular 35.09 29.98
CDY11585 Canola extracellular 35.09 29.98
CDY67535 Canola extracellular 22.81 29.26
CDY13645 Canola extracellular 33.83 28.72
CDX83631 Canola extracellular 33.83 28.66
CDY44150 Canola extracellular, golgi, plastid 35.59 28.29
CDX77909 Canola extracellular 34.59 28.11
CDY71357 Canola extracellular, vacuole 22.31 28.08
CDY20612 Canola extracellular 36.84 27.68
CDY20962 Canola extracellular, golgi, vacuole 36.59 27.5
CDY43307 Canola extracellular 32.58 27.48
Os01t0172900-00 Rice nucleus 20.3 27.46
CDX93397 Canola extracellular, golgi, vacuole 36.59 27.39
CDX93644 Canola extracellular 32.33 27.33
CDY37962 Canola extracellular, golgi, vacuole 36.34 27.26
CDY15246 Canola extracellular 33.33 27.09
CDX89966 Canola extracellular 33.33 27.09
CDY54228 Canola extracellular, golgi, vacuole 35.59 26.89
CDY47212 Canola extracellular 35.84 26.68
CDY50367 Canola extracellular, golgi 35.84 26.68
CDY34877 Canola extracellular, golgi 32.33 26.38
CDY41445 Canola endoplasmic reticulum 35.84 25.72
CDY61868 Canola extracellular 34.84 25.32
CDY06100 Canola extracellular 25.31 23.65
GSMUA_Achr4P06370_001 Banana extracellular 38.6 20.42
Protein Annotations
Gene3D:2.160.20.10MapMan:50.3.2GO:A0A078HPS4UniProt:A0A078HPS4EnsemblPlants:CDY39404ProteinID:CDY39404
ProteinID:CDY39404.1GO:GO:0003674GO:GO:0003824GO:GO:0004650GO:GO:0005575GO:GO:0005576
GO:GO:0005975GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0016043GO:GO:0016787GO:GO:0016798GO:GO:0071555EnsemblPlantsGene:GSBRNA2T00067865001InterPro:Glyco_hydro_28
InterPro:IPR012334PFAM:PF00295ScanProsite:PS00502PANTHER:PTHR31375PANTHER:PTHR31375:SF42InterPro:PbH1
InterPro:Pectin_lyas_foldInterPro:Pectin_lyase_fold/virulenceSMART:SM00710SUPFAM:SSF51126TMHMM:TMhelixUniParc:UPI0004EE6C17
Description
BnaAnng05350DBnaAnng05350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HPS4]
Coordinates
chrLK032447:-:89775..92526
Molecular Weight (calculated)
43270.4 Da
IEP (calculated)
5.873
GRAVY (calculated)
-0.143
Length
399 amino acids
Sequence
(BLAST)
001: MKTTEDIYIE IIVRVVFVLT LLNFGFVNSQ IYDVLKFGAE GDGTTDDSKA FVAAWKAMCS SGGSNKTLLI PSDNTFLLQP LVFQGPCNSP SVQVQLDGKI
101: VAPLNKAAWS GLKSYEWVSF HKIIGLTVLG SGTINGRGSS FWEANMPASK RPTQLHFKGC NNLEINGITS FDSPRNHISI RDCRQVKITQ IKLIAPGDSP
201: NTDGIDISTS TNVEIYDTIV GTGDDCVALN SGSININITR MQCGPGHGIS VGSLGRDGEE SIVENVQVTN CTFSETTNGA RIKTWPNGKG YARNIVFKDI
301: TLTETKNPII IDQHYMDKGH IHVEESSAVA ISNVIFTDIH GTSQKDEIIK IDCSGVTSCK DIVLDRIDIT TVDGNKPIIE CSNAYGKSTN TYDGCLKTK
Best Arabidopsis Sequence Match ( AT5G44840.1 )
(BLAST)
001: MEIILRGVFL LTLLHSILVN GQIYDVLEFG ADGNGITDDS KAFVKAWSAM CGSGGNSKTF IIPSNKTFLL QPLTFQGPCK SPSVQVKFDG KIVAPINKAA
101: WSDYKLFRWV SFKEIIGLTV NGSGTIHGRG SSFWKQGLPA SKRPTQLHFQ RCNDLMITGI TSFNSPKNHI SISECKRVKI TKIKLVAPHD SPNTDGINIS
201: ESSDVDIYDT VIGTGDDCVA INSGSMNINI ARMNCGPGHG ISVGSVGRDG EESIVENVQV TNCTFIRTDN GARIKTWPNG KGYAKNILFK SLTFRETKNP
301: IIIDQNYVDK GRLDVEESAV AISNVTFTDL RGTSKLDEII KIDCSKVTYC KDIVLDKIDI ATVDGNKPIV ECSNVYGKSI NANEANGCFK T
Arabidopsis Description
Pectin lyase-like superfamily protein [Source:TAIR;Acc:AT5G44840]
SUBAcon: [extracellular]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.