CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, nucleus, cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus, plastid
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus, plastid
BaCelLo:	secretory
ChloroP:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14715	Soybean	cytosol, extracellular, nucleus, plastid	94.17	97.69
KRG88958	Soybean	extracellular	48.06	48.73
KRH48978	Soybean	extracellular	39.44	47.65
KRH66276	Soybean	extracellular	43.61	44.23
KRH66273	Soybean	extracellular	38.06	44.19
KRH23567	Soybean	extracellular	46.94	42.14
PGSC0003DMT400056828	Potato	extracellular	46.11	41.71
PGSC0003DMT400008955	Potato	extracellular	40.0	41.38
KRH66305	Soybean	extracellular	43.06	40.26
KRH09740	Soybean	extracellular	47.5	40.24
GSMUA_Achr11P...	Banana	extracellular	46.11	39.9
GSMUA_Achr4P13200_001	Banana	extracellular	45.83	39.1
TraesCS2B01G423400.1	Wheat	plastid	37.78	38.75
GSMUA_Achr9P22320_001	Banana	extracellular	43.89	38.26
TraesCS2A01G405600.1	Wheat	extracellular	33.89	38.24
TraesCS2D01G402200.1	Wheat	extracellular	41.11	37.85
TraesCS2A01G405300.1	Wheat	extracellular, nucleus	41.39	36.79
KXG26899	Sorghum	extracellular	42.78	36.67
TraesCS2B01G423300.1	Wheat	extracellular	40.83	36.66
TraesCS2A01G405100.1	Wheat	extracellular	42.22	36.45
TraesCS2D01G402100.1	Wheat	extracellular	40.28	35.8
HORVU2Hr1G096130.1	Barley	extracellular	40.28	35.8
TraesCS2D01G402300.1	Wheat	extracellular	33.06	35.74
KRH05150	Soybean	extracellular	26.39	35.32
TraesCS2B01G423200.1	Wheat	extracellular	41.39	35.06
TraesCS2D01G402000.1	Wheat	extracellular	41.39	34.81
KRH23942	Soybean	extracellular	41.39	33.86
KRH39858	Soybean	extracellular	41.39	33.79
KRH32949	Soybean	extracellular	40.83	33.56
KRH71979	Soybean	extracellular	39.44	33.18
KRH13966	Soybean	extracellular	40.0	32.8
Zm00001d039668_P001	Maize	plastid	37.5	30.89
KRG93260	Soybean	extracellular	37.78	30.7
KRH56581	Soybean	extracellular	37.22	30.52
KRH66955	Soybean	extracellular	39.17	30.39
KRH33163	Soybean	extracellular, plastid	39.17	29.56
KRH09752	Soybean	extracellular	37.5	29.48
KRH68311	Soybean	extracellular	36.11	28.14
KRG96576	Soybean	extracellular	36.11	28.14
KRH74551	Soybean	extracellular	35.28	27.55
KRH69612	Soybean	extracellular	35.28	27.49
KRH36916	Soybean	extracellular, nucleus	36.11	27.43
KRG95273	Soybean	extracellular	39.44	27.15
KRH11881	Soybean	extracellular	36.11	27.14
KRG96690	Soybean	extracellular	34.44	27.02
KRH42407	Soybean	extracellular	36.11	26.86
KRH58524	Soybean	extracellular	36.11	26.53
Os01t0172900-00	Rice	nucleus	21.67	26.44
KRH69173	Soybean	extracellular	34.44	26.22
KRH31755	Soybean	extracellular	34.17	25.89
KRH45648	Soybean	nucleus	38.06	25.46
KRG99364	Soybean	extracellular, nucleus	37.5	25.09
GSMUA_Achr4P06370_001	Banana	extracellular	42.78	20.42
KRG99363	Soybean	extracellular	36.39	14.87

Protein Annotations

Gene3D:2.160.20.10	MapMan:50.3.2	UniProt:A0A0R0H031	EMBL:ACUP02007160	EnsemblPlantsGene:GLYMA_12G003700	GO:GO:0003674
GO:GO:0003824	GO:GO:0004650	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0016798	GO:GO:0071555
InterPro:Glyco_hydro_28	InterPro:IPR012334	EnsemblPlants:KRH23786	ProteinID:KRH23786	ProteinID:KRH23786.1	PFAM:PF00295
ScanProsite:PS00502	PANTHER:PTHR31375	PANTHER:PTHR31375:SF42	InterPro:PbH1	InterPro:Pectin_lyas_fold	InterPro:Pectin_lyase_fold/virulence
SMART:SM00710	SUPFAM:SSF51126	UniParc:UPI0006EDEDE7	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:294751..296671

Molecular Weight (calculated)

38183.8 Da

IEP (calculated)

6.418

GRAVY (calculated)

-0.189

Length

360 amino acids

Sequence
(BLAST)

001: MDYGAIGDGL TDDSQAFLKA WSMVCAMKNG AATLKVPPGK TFMLKPLQFS GPCSFSSVHF QLEGDVVAPK STEAWKGQDS SKWIDFSNVD GLIIDGGGQI
101: DGSGSVWWNS CKALSIHNCN NLQLTGTRHL NSARNHISIN NSNHTHIFNV TITAPQDSPN TDGIDVSQSS YILIQRSTIA TGDDCIAMNS GTSYVNITGI
201: TCGPGHGISV GSLGKKGTCQ TVEHVHVSNC NFKGADNGMR IKTWPGGCGY ARNIKFEHIV LTNTKNPIII DQDYENVQNE DKKQTSEVQI SGVTYRYVNG
301: TCNSETAIIL NCGAGAGCTD IFMDLVNITS TSSGSNVLAS CNNAHGVAAS TSPPVSCLSL

Best Arabidopsis Sequence Match ( AT3G15720.1 )
(BLAST)

001: MKKKTWFLNF SLFFLQIFTS SNALDVTQFG AVGDGVTDDS QAFLKAWEAV CSGTGDGQFV VPAGMTFMLQ PLKFQGSCKS TPVFVQMLGK LVAPSKGNWK
101: GDKDQWILFT DIEGLVIEGD GEINGQGSSW WEHKGSRPTA LKFRSCNNLR LSGLTHLDSP MAHIHISECN YVTISSLRIN APESSPNTDG IDVGASSNVV
201: IQDCIIATGD DCIAINSGTS NIHISGIDCG PGHGISIGSL GKDGETATVE NVCVQNCNFR GTMNGARIKT WQGGSGYARM ITFNGITLDN VENPIIIDQF
301: YNGGDSDNAK DRKSSAVEVS KVVFSNFIGT SKSEYGVDFR CSERVPCTEI FLRDMKIETA SSGSGQVAQG QCLNVRGAST IAVPGLECLE LSTDMFSSAQ
401: LLEQTCMSAQ SVQPRTTTQP MQDPIWVFQS RGKQLRVYNI AILVSFISLV TYILAR

Arabidopsis Description

Probable polygalacturonase At3g15720 [Source:UniProtKB/Swiss-Prot;Acc:Q9LW07]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.