Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- golgi 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053479 | Potato | plasma membrane | 97.55 | 97.55 |
| TraesCS6B01G398000.1 | Wheat | extracellular | 39.16 | 87.5 |
| Os04t0559700-01 | Rice | plasma membrane | 87.76 | 87.15 |
| GSMUA_AchrUn_... | Banana | extracellular | 57.69 | 86.84 |
| EES11257 | Sorghum | cytosol, peroxisome, plasma membrane | 87.41 | 86.81 |
| Zm00001d002690_P001 | Maize | plasma membrane | 87.06 | 86.46 |
| TraesCS2B01G425600.1 | Wheat | golgi, plasma membrane | 87.06 | 86.46 |
| GSMUA_Achr8P11540_001 | Banana | extracellular | 57.34 | 86.32 |
| AT4G00430.1 | Thale cress | golgi, peroxisome, plasma membrane | 86.36 | 86.06 |
| Solyc01g094690.2.1 | Tomato | nucleus | 85.66 | 85.96 |
| TraesCS6B01G279200.1 | Wheat | plastid | 87.06 | 85.86 |
| Zm00001d017526_P001 | Maize | plasma membrane | 86.71 | 85.81 |
| Os02t0666200-01 | Rice | plasma membrane | 86.71 | 85.81 |
| EES07484 | Sorghum | plasma membrane | 86.71 | 85.81 |
| GSMUA_Achr5P12400_001 | Banana | extracellular | 56.99 | 85.79 |
| Zm00001d051872_P001 | Maize | plasma membrane | 86.01 | 85.42 |
| AT1G01620.1 | Thale cress | golgi, peroxisome, plasma membrane | 85.31 | 85.31 |
| CDY38017 | Canola | plasma membrane | 85.31 | 85.31 |
| Zm00001d051403_P001 | Maize | plasma membrane | 87.06 | 85.27 |
| TraesCS6D01G227500.1 | Wheat | golgi | 86.36 | 85.17 |
| TraesCS2B01G605900.1 | Wheat | golgi, peroxisome, plasma membrane | 86.01 | 85.12 |
| AT4G23400.1 | Thale cress | plasma membrane | 85.31 | 85.02 |
| CDY51161 | Canola | cytosol, peroxisome, plasma membrane | 84.97 | 84.97 |
| VIT_15s0046g02420.t01 | Wine grape | peroxisome | 84.97 | 84.97 |
| TraesCS6D01G389500.1 | Wheat | plasma membrane | 86.71 | 84.93 |
| HORVU6Hr1G064140.1 | Barley | golgi, peroxisome, plasma membrane | 86.01 | 84.83 |
| Bra032644.1-P | Field mustard | plasma membrane | 84.62 | 84.62 |
| TraesCS6B01G450200.1 | Wheat | plastid | 86.36 | 84.59 |
| Bra000974.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 84.97 | 84.38 |
| CDX74334 | Canola | cytosol, peroxisome, plasma membrane | 84.97 | 84.38 |
| CDY07221 | Canola | cytosol, peroxisome, plasma membrane | 84.27 | 84.27 |
| Solyc08g081190.2.1 | Tomato | plastid | 84.27 | 84.27 |
| TraesCS6D01G389400.1 | Wheat | plasma membrane | 86.01 | 84.25 |
| TraesCS5B01G178700.1 | Wheat | plasma membrane | 86.01 | 84.25 |
| TraesCS5D01G185400.1 | Wheat | plasma membrane | 86.01 | 84.25 |
| TraesCS6B01G450000.1 | Wheat | unclear | 86.01 | 84.25 |
| GSMUA_AchrUn_... | Banana | extracellular | 55.94 | 84.21 |
| OQU85985 | Sorghum | cytosol, peroxisome, plasma membrane | 85.31 | 84.14 |
| CDX91911 | Canola | cytosol, peroxisome, plasma membrane | 84.62 | 84.03 |
| Solyc12g056220.1.1 | Tomato | plastid | 84.62 | 84.03 |
| CDY10936 | Canola | plasma membrane | 84.27 | 83.97 |
| CDX90046 | Canola | cytosol, peroxisome, plasma membrane | 83.92 | 83.92 |
| CDX83385 | Canola | cytosol, peroxisome, plasma membrane | 83.92 | 83.92 |
| Bra033248.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 83.92 | 83.92 |
| Bra019307.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 83.92 | 83.62 |
| Solyc08g008050.2.1 | Tomato | peroxisome | 83.92 | 83.62 |
| CDX95670 | Canola | cytosol, peroxisome, plasma membrane | 83.57 | 83.57 |
| CDY18886 | Canola | cytosol, peroxisome, plasma membrane | 83.57 | 83.57 |
| CDX74777 | Canola | cytosol, peroxisome, plasma membrane | 83.57 | 83.57 |
| CDX94185 | Canola | plasma membrane | 83.57 | 83.28 |
| AT3G61430.1 | Thale cress | plasma membrane | 83.22 | 83.22 |
| CDY27346 | Canola | cytosol, peroxisome, plasma membrane | 83.22 | 83.22 |
| CDY37078 | Canola | cytosol, peroxisome, plasma membrane | 83.22 | 83.22 |
| CDY48920 | Canola | plasma membrane | 83.22 | 83.22 |
| CDX89115 | Canola | plasma membrane | 65.38 | 83.11 |
| CDY66912 | Canola | extracellular | 59.79 | 83.01 |
| Bra004950.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 82.87 | 82.87 |
| Bra007603.1-P | Field mustard | plasma membrane | 82.87 | 82.87 |
| CDX71738 | Canola | plasma membrane | 82.87 | 82.87 |
| VIT_02s0025g03390.t01 | Wine grape | peroxisome | 82.87 | 82.58 |
| Bra014437.1-P | Field mustard | plasma membrane | 82.17 | 82.17 |
| HORVU5Hr1G055200.4 | Barley | golgi, plastid | 85.66 | 78.78 |
| VIT_15s0046g02410.t01 | Wine grape | plasma membrane | 78.67 | 78.67 |
| EER89434 | Sorghum | peroxisome | 80.42 | 77.7 |
| CDY66913 | Canola | cytosol, mitochondrion, nucleus | 12.24 | 76.09 |
| CDY15165 | Canola | plastid | 84.97 | 75.0 |
| Solyc09g007770.2.1 | Tomato | nucleus | 66.43 | 73.36 |
| TraesCS2D01G404800.2 | Wheat | golgi, peroxisome, plasma membrane | 80.42 | 73.25 |
| AT2G45960.3 | Thale cress | golgi, peroxisome, plasma membrane | 76.57 | 72.76 |
| Solyc02g083510.2.1 | Tomato | nucleus | 63.64 | 70.27 |
| Solyc10g084120.1.1 | Tomato | nucleus | 68.53 | 69.75 |
| Solyc06g011350.2.1 | Tomato | nucleus | 67.48 | 68.93 |
| Solyc10g055630.1.1 | Tomato | nucleus, plastid | 67.13 | 67.84 |
| Solyc01g111660.2.1 | Tomato | nucleus | 67.13 | 67.84 |
| Solyc11g069430.1.1 | Tomato | plastid | 66.78 | 66.55 |
| Solyc09g007760.2.1 | Tomato | extracellular | 67.83 | 63.4 |
| Solyc05g055990.2.1 | Tomato | nucleus, plasma membrane | 58.39 | 57.79 |
| Solyc12g044330.1.1 | Tomato | plastid | 31.47 | 36.29 |
| Solyc06g060760.2.1 | Tomato | endoplasmic reticulum | 30.07 | 34.4 |
| Solyc10g083880.1.1 | Tomato | plastid | 29.37 | 33.87 |
| Solyc06g075650.2.1 | Tomato | endoplasmic reticulum | 29.72 | 33.6 |
| Solyc06g072130.2.1 | Tomato | extracellular | 30.42 | 33.59 |
| Solyc06g066560.1.1 | Tomato | mitochondrion | 31.12 | 32.6 |
| Solyc06g074820.2.1 | Tomato | plastid | 28.32 | 32.4 |
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 26.92 | 31.17 |
| Solyc03g019820.2.1 | Tomato | cytosol, golgi, plasma membrane | 28.32 | 31.15 |
| Solyc03g093230.2.1 | Tomato | plastid | 26.57 | 30.28 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 |
| GO:GO:0008150 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 |
| GO:GO:0055085 | InterPro:IPR023271 | UniProt:K4BJ51 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 |
| PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF190 | SUPFAM:SSF81338 | EnsemblPlantsGene:Solyc03g096290.2 |
| EnsemblPlants:Solyc03g096290.2.1 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0002767C06 | : | : |
Description
No Description!
Coordinates
chr3:+:58262730..58264312
Molecular Weight (calculated)
30724.5 Da
IEP (calculated)
9.052
GRAVY (calculated)
0.400
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHREEDVRL GANKYSERQA IGIAAQSEDK DYKEPPPAPL FEPGELMSWS FYRAGIAEFV ATFLFLYITV LTVMGVSKSD SKCSTVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMVMQ CLGAICGAAL VKAFGKTLYQ TKGGGANVVN VGYTKGDGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPV TGTGINPARS LGAAVIYNNE QAWKDHWIFW VGPFIGAALA ALYHQVVIRA IPFKSK
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMVMQ CLGAICGAAL VKAFGKTLYQ TKGGGANVVN VGYTKGDGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPV TGTGINPARS LGAAVIYNNE QAWKDHWIFW VGPFIGAALA ALYHQVVIRA IPFKSK
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [golgi,plasma membrane,peroxisome]
SUBAcon: [golgi,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.