Factsheet for TraesCS6B01G450200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G065700.1
TraesCS2A01G198500.1
TraesCS2B01G077700.1
TraesCS2B01G225900.1
TraesCS2D01G063900.1
TraesCS2D01G206300.1
TraesCS5A01G316300.1
TraesCS5B01G316800.1
TraesCS5D01G322500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01620.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS5A01G316300.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5B01G316800.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5D01G322500.1	AT4G24090.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2A01G065700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2B01G077700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2D01G063900.1	AT4G35100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G389500.1	Wheat	plasma membrane	99.66	99.66
TraesCS6A01G405700.1	Wheat	golgi	99.66	99.66
TraesCS5B01G178700.1	Wheat	plasma membrane	98.29	98.29
TraesCS6B01G450000.1	Wheat	unclear	98.29	98.29
TraesCS6B01G279200.1	Wheat	plastid	88.36	88.97
GSMUA_Achr8P11540_001	Banana	extracellular	57.53	88.42
TraesCS6B01G398000.1	Wheat	extracellular	38.7	88.28
GSMUA_AchrUn_...	Banana	extracellular	57.19	87.89
TraesCS2B01G425600.1	Wheat	golgi, plasma membrane	86.3	87.5
CDX89115	Canola	plasma membrane	67.12	87.11
CDY66912	Canola	extracellular	60.96	86.41
CDY38017	Canola	plasma membrane	84.59	86.36
Solyc03g096290.2.1	Tomato	nucleus	84.59	86.36
AT4G00430.1	Thale cress	golgi, peroxisome, plasma membrane	84.59	86.06
AT1G01620.1	Thale cress	golgi, peroxisome, plasma membrane	84.25	86.01
CDX83385	Canola	cytosol, peroxisome, plasma membrane	84.25	86.01
CDY51161	Canola	cytosol, peroxisome, plasma membrane	84.25	86.01
TraesCS2B01G605900.1	Wheat	golgi, peroxisome, plasma membrane	84.93	85.81
AT4G23400.1	Thale cress	plasma membrane	84.25	85.71
CDX95670	Canola	cytosol, peroxisome, plasma membrane	83.9	85.66
CDX74777	Canola	cytosol, peroxisome, plasma membrane	83.9	85.66
Solyc01g094690.2.1	Tomato	nucleus	83.56	85.61
CDX74334	Canola	cytosol, peroxisome, plasma membrane	84.25	85.42
CDY10936	Canola	plasma membrane	83.9	85.37
CDY27346	Canola	cytosol, peroxisome, plasma membrane	83.56	85.31
CDY37078	Canola	cytosol, peroxisome, plasma membrane	83.56	85.31
CDY18886	Canola	cytosol, peroxisome, plasma membrane	83.56	85.31
CDY07221	Canola	cytosol, peroxisome, plasma membrane	83.56	85.31
CDX91911	Canola	cytosol, peroxisome, plasma membrane	83.9	85.07
CDY48920	Canola	plasma membrane	83.22	84.97
CDX90046	Canola	cytosol, peroxisome, plasma membrane	83.22	84.97
CDX71738	Canola	plasma membrane	83.22	84.97
AT3G61430.1	Thale cress	plasma membrane	83.22	84.97
CDX94185	Canola	plasma membrane	82.19	83.62
Solyc08g008050.2.1	Tomato	peroxisome	81.85	83.28
Solyc12g056220.1.1	Tomato	plastid	81.85	82.99
Solyc08g081190.2.1	Tomato	plastid	80.82	82.52
EER89434	Sorghum	peroxisome	79.79	78.72
CDY66913	Canola	cytosol, mitochondrion, nucleus	11.99	76.09
CDY15165	Canola	plastid	84.25	75.93
AT2G45960.3	Thale cress	golgi, peroxisome, plasma membrane	76.37	74.09
TraesCS2B01G077700.1	Wheat	plasma membrane	66.78	68.66
TraesCS2B01G396800.1	Wheat	golgi	66.78	67.24
TraesCS2B01G225900.1	Wheat	golgi	66.44	66.9
TraesCS6B01G259000.1	Wheat	golgi, peroxisome, plasma membrane	65.07	66.43
TraesCS2B01G396700.2	Wheat	plasma membrane	66.78	66.1
TraesCS5B01G570800.1	Wheat	golgi, peroxisome, plasma membrane	62.33	64.54
TraesCS7B01G002000.1	Wheat	golgi, peroxisome, plasma membrane	61.64	63.38
TraesCS4B01G362300.1	Wheat	golgi, peroxisome, plasma membrane	59.93	59.93
TraesCS5B01G567500.1	Wheat	golgi, peroxisome, plasma membrane	59.25	59.86
TraesCS7B01G003900.1	Wheat	golgi, peroxisome, plasma membrane	59.25	59.45
TraesCS5B01G332500.1	Wheat	plasma membrane	59.25	59.45
TraesCS7B01G003800.1	Wheat	golgi, peroxisome, plasma membrane	58.22	58.82
TraesCS5B01G567600.1	Wheat	golgi, peroxisome, plasma membrane	58.22	58.42
TraesCS6B01G114400.1	Wheat	golgi, peroxisome, plasma membrane	56.51	55.93
TraesCS7B01G096000.1	Wheat	golgi, peroxisome, plasma membrane	54.11	51.97
TraesCS4B01G027600.1	Wheat	plasma membrane	48.63	48.8
TraesCS7B01G243000.1	Wheat	plasma membrane	29.11	34.27
TraesCS6B01G275100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	29.11	34.14
TraesCS2B01G433200.1	Wheat	plasma membrane	28.77	33.87
TraesCS3B01G608500.1	Wheat	plasma membrane	29.11	33.73
TraesCS4B01G310900.1	Wheat	unclear	27.4	32.0
TraesCS3B01G182200.1	Wheat	endoplasmic reticulum, extracellular, vacuole	27.4	31.87
TraesCS2B01G391400.1	Wheat	extracellular, plasma membrane, vacuole	27.4	30.19
TraesCS1B01G182200.1	Wheat	golgi	27.05	30.04
TraesCS2B01G433300.1	Wheat	endoplasmic reticulum	25.0	29.44
TraesCS3B01G182400.1	Wheat	plasma membrane	24.66	29.03
TraesCS4B01G349500.1	Wheat	plasma membrane	22.95	26.27

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF262	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6B01G450200
EnsemblPlants:TraesCS6B01G450200.1	TIGR:cd00333	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:-:709019639..709020699

Molecular Weight (calculated)

30924.5 Da

IEP (calculated)

8.297

GRAVY (calculated)

0.366

Length

292 amino acids

Sequence
(BLAST)

001: MEGKEEDVRL GANRYSERQP IGTAAQGGGA DEKDYKEPPP APLFEAEELT SWSFYRAGIA EFLATFLFLY ISVLTVMGVV GNPSGSKCGT VGIQGIAWSF
101: GGMIFVLVYC TAGISGGHIN PAVTFGLFLA RKLSLTRAVF YMAMQCLGAI CGAGVVKGFQ TTLYQGNGGG ANSVAPGYTK GDGLGAEIVG TFVLVYTVFS
201: ATDAKRSARD SHVPILAPLP IGFAVFLVHL ATIPITGTGI NPARSLGAAI IYNKKQAWDD HWIFWVGPFI GAALAAIYHV VVIRAIPFKS RD

Best Arabidopsis Sequence Match ( AT1G01620.1 )
(BLAST)

001: MEGKEEDVRV GANKFPERQP IGTSAQTDKD YKEPPPAPFF EPGELSSWSF YRAGIAEFIA TFLFLYITVL TVMGVKRAPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS

Arabidopsis Description

PIP1-3TMP-B [Source:UniProtKB/TrEMBL;Acc:A0A178WIA6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.