Factsheet for TraesCS6A01G405700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G389500.1	Wheat	plasma membrane	100.0	100.0
TraesCS6B01G450200.1	Wheat	plastid	99.66	99.66
TraesCS6A01G405600.1	Wheat	plasma membrane	98.63	98.63
TraesCS5A01G181000.1	Wheat	plastid	97.6	98.28
GSMUA_Achr8P11540_001	Banana	extracellular	57.88	88.95
GSMUA_AchrUn_...	Banana	extracellular	57.53	88.42
TraesCS6A01G245100.1	Wheat	golgi, peroxisome, plasma membrane	87.67	88.28
EER89434	Sorghum	peroxisome	80.14	79.05
TraesCS2A01G065700.1	Wheat	golgi	67.47	69.37
TraesCS5A01G100000.1	Wheat	plasma membrane	66.44	67.83
TraesCS2A01G379900.1	Wheat	plasma membrane	67.12	67.59
TraesCS2A01G407700.2	Wheat	golgi, peroxisome, plasma membrane	66.78	67.47
TraesCS2A01G379800.1	Wheat	plasma membrane	66.78	67.24
TraesCS2A01G198500.1	Wheat	plasma membrane	66.78	67.24
TraesCS6A01G222100.1	Wheat	golgi, peroxisome, plasma membrane	65.41	66.78
TraesCS5A01G332300.1	Wheat	plasma membrane	59.59	59.79
TraesCS5A01G530600.1	Wheat	golgi, peroxisome, plasma membrane	59.59	59.59
TraesCS4A01G312700.1	Wheat	plasma membrane	58.9	59.11
TraesCS6A01G082900.1	Wheat	golgi, peroxisome, plasma membrane	57.53	56.95
TraesCS7A01G191200.1	Wheat	golgi, peroxisome, plasma membrane	53.77	51.64
TraesCS4A01G286200.1	Wheat	golgi, peroxisome, plasma membrane	53.08	50.99
TraesCS7A01G331300.1	Wheat	unclear	29.45	34.68
TraesCS6A01G250300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	29.45	34.54
TraesCS2A01G414100.1	Wheat	plasma membrane	29.11	34.27
TraesCS3A01G535300.1	Wheat	plasma membrane	29.45	34.13
TraesCS4A01G410800.1	Wheat	golgi, plasma membrane, vacuole	27.4	32.0
TraesCS2A01G374400.1	Wheat	plasma membrane	27.74	30.57
TraesCS2A01G414200.1	Wheat	plastid	27.05	30.15
TraesCS1A01G165400.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	27.05	30.04
TraesCS3A01G434600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	23.63	29.11
TraesCS3A01G155800.1	Wheat	plasma membrane	24.66	29.03
TraesCS5A01G518300.1	Wheat	golgi, plasma membrane, vacuole	22.95	26.17

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF262	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6A01G405700
EnsemblPlants:TraesCS6A01G405700.1	TIGR:cd00333	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:-:611521877..611523292

Molecular Weight (calculated)

30952.6 Da

IEP (calculated)

8.297

GRAVY (calculated)

0.375

Length

292 amino acids

Sequence
(BLAST)

001: MEGKEEDVRL GANRYSERQP IGTAAQGGGA DEKDYKEPPP APLFEAEELT SWSFYRAGIA EFLATFLFLY ISVLTVMGVV GNPSGSKCGT VGIQGIAWSF
101: GGMIFVLVYC TAGISGGHIN PAVTFGLFLA RKLSLTRAVF YMVMQCLGAI CGAGVVKGFQ TTLYQGNGGG ANSVAPGYTK GDGLGAEIVG TFVLVYTVFS
201: ATDAKRSARD SHVPILAPLP IGFAVFLVHL ATIPITGTGI NPARSLGAAI IYNKKQAWDD HWIFWVGPFI GAALAAIYHV VVIRAIPFKS RD

Best Arabidopsis Sequence Match ( AT1G01620.1 )
(BLAST)

001: MEGKEEDVRV GANKFPERQP IGTSAQTDKD YKEPPPAPFF EPGELSSWSF YRAGIAEFIA TFLFLYITVL TVMGVKRAPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS

Arabidopsis Description

PIP1-3TMP-B [Source:UniProtKB/TrEMBL;Acc:A0A178WIA6]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.