Factsheet for TraesCS2A01G065700.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 22160430
golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G065700.1
TraesCS2A01G198500.1
TraesCS2A01G346700.1
TraesCS2A01G368500.1
TraesCS2A01G407700.2
TraesCS2B01G077700.1
TraesCS2B01G225900.1
TraesCS2B01G365000.1
TraesCS2B01G385700.2
TraesCS2B01G425600.1
TraesCS2B01G605900.1
TraesCS2D01G063900.1
TraesCS2D01G206300.1
TraesCS2D01G345400.1
TraesCS2D01G365300.2
TraesCS2D01G404800.2
TraesCS5B01G178700.1
TraesCS5D01G185400.1
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6B01G279200.1
TraesCS6B01G398000.1
TraesCS6B01G450000.1
TraesCS6B01G450200.1
TraesCS6D01G220300.1
TraesCS6D01G227500.1
TraesCS6D01G389400.1
TraesCS6D01G389500.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16850.1	TraesCS2A01G407700.2	AT1G01620.1	21798944
AT2G16850.1	TraesCS2B01G425600.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS2B01G605900.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS2D01G404800.2	AT1G01620.1	21798944
AT2G16850.1	TraesCS5B01G178700.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS5D01G185400.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS6B01G279200.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS6B01G398000.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS6B01G450000.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS6B01G450200.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS6D01G227500.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS6D01G389400.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS6D01G389500.1	AT1G01620.1	21798944
AT2G16850.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT2G16850.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT2G16850.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT2G16850.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT2G16850.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT2G16850.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT2G16850.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT2G16850.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT2G16850.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT2G16850.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT2G16850.1	TraesCS7D01G296400.1	AT3G60600.1	21798944
AT2G16850.1	TraesCS2A01G407700.2	AT4G00430.1	21798944
AT2G16850.1	TraesCS2B01G425600.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS2B01G605900.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS2D01G404800.2	AT4G00430.1	21798944
AT2G16850.1	TraesCS5B01G178700.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS5D01G185400.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS6B01G279200.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS6B01G398000.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS6B01G450000.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS6B01G450200.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS6D01G227500.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS6D01G389400.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS6D01G389500.1	AT4G00430.1	21798944
AT2G16850.1	TraesCS2A01G407700.2	AT4G23400.1	21798944
AT2G16850.1	TraesCS2B01G425600.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS2B01G605900.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS2D01G404800.2	AT4G23400.1	21798944
AT2G16850.1	TraesCS5B01G178700.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS5D01G185400.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS6B01G279200.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS6B01G398000.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS6B01G450000.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS6B01G450200.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS6D01G227500.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS6D01G389400.1	AT4G23400.1	21798944
AT2G16850.1	TraesCS6D01G389500.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS2A01G407700.2	AT1G01620.1	21798944
AT4G35100.1	TraesCS2B01G425600.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS2B01G605900.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS2D01G404800.2	AT1G01620.1	21798944
AT4G35100.1	TraesCS5B01G178700.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS5D01G185400.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS6B01G279200.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS6B01G398000.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS6B01G450000.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS6B01G450200.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS6D01G227500.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS6D01G389400.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS6D01G389500.1	AT1G01620.1	21798944
AT4G35100.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT4G35100.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT4G35100.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT4G35100.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT4G35100.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT4G35100.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT4G35100.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT4G35100.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT4G35100.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT4G35100.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT4G35100.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT4G35100.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT4G35100.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT4G35100.1	TraesCS7D01G296400.1	AT3G60600.1	21798944
AT4G35100.1	TraesCS2A01G407700.2	AT3G61430.1	21798944
AT4G35100.1	TraesCS2B01G425600.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS2B01G605900.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS2D01G404800.2	AT3G61430.1	21798944
AT4G35100.1	TraesCS5B01G178700.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS5D01G185400.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS6B01G279200.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS6B01G398000.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS6B01G450000.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS6B01G450200.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS6D01G227500.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS6D01G389400.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS6D01G389500.1	AT3G61430.1	21798944
AT4G35100.1	TraesCS2A01G407700.2	AT4G00430.1	21798944
AT4G35100.1	TraesCS2B01G425600.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS2B01G605900.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS2D01G404800.2	AT4G00430.1	21798944
AT4G35100.1	TraesCS5B01G178700.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS5D01G185400.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS6B01G279200.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS6B01G398000.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS6B01G450000.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS6B01G450200.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS6D01G227500.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS6D01G389400.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS6D01G389500.1	AT4G00430.1	21798944
AT4G35100.1	TraesCS2A01G407700.2	AT4G23400.1	21798944
AT4G35100.1	TraesCS2B01G425600.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS2B01G605900.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS2D01G404800.2	AT4G23400.1	21798944
AT4G35100.1	TraesCS5B01G178700.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS5D01G185400.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS6B01G279200.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS6B01G398000.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS6B01G450000.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS6B01G450200.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS6D01G227500.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS6D01G389400.1	AT4G23400.1	21798944
AT4G35100.1	TraesCS6D01G389500.1	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G063900.1	Wheat	plasma membrane	99.3	99.3
TraesCS2B01G077700.1	Wheat	plasma membrane	99.3	99.3
Os04t0233400-01	Rice	plasma membrane	88.03	88.65
GSMUA_Achr5P11480_001	Banana	plasma membrane	59.86	85.86
GSMUA_Achr1P02360_001	Banana	unclear	84.15	84.75
GSMUA_Achr2P11190_001	Banana	plasma membrane	83.45	84.34
AT2G16850.1	Thale cress	plasma membrane	80.63	82.37
VIT_03s0038g02520.t01	Wine grape	plasma membrane	79.93	81.36
Bra011585.1-P	Field mustard	plasma membrane	80.28	81.14
CDY52648	Canola	plasma membrane	80.28	81.14
Bra017697.1-P	Field mustard	cytosol	79.93	80.78
CDX69112	Canola	plasma membrane	79.93	80.78
CDX76314	Canola	cytosol	79.93	80.78
CDY17511	Canola	plasma membrane	79.58	80.43
AT4G35100.1	Thale cress	plasma membrane	79.23	80.36
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	79.23	80.07
KRH60692	Soybean	mitochondrion	77.46	80.0
KRH51390	Soybean	plasma membrane	77.46	79.14
Solyc01g111660.2.1	Tomato	nucleus	78.52	78.8
CDX72515	Canola	golgi, plasma membrane	70.42	78.74
HORVU2Hr1G010990.2	Barley	plasma membrane	88.03	78.62
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	69.37	78.49
PGSC0003DMT400015824	Potato	plasma membrane	78.17	78.45
Solyc02g083510.2.1	Tomato	nucleus	70.77	77.61
Solyc10g055630.1.1	Tomato	nucleus, plastid	76.06	76.33
PGSC0003DMT400068708	Potato	plasma membrane	75.0	75.27
TraesCS2A01G198500.1	Wheat	plasma membrane	76.76	75.17
TraesCS2A01G379800.1	Wheat	plasma membrane	76.41	74.83
TraesCS2A01G379900.1	Wheat	plasma membrane	75.0	73.45
TraesCS6A01G222100.1	Wheat	golgi, peroxisome, plasma membrane	73.94	73.43
KRH16406	Soybean	extracellular	39.44	73.2
TraesCS5A01G100000.1	Wheat	plasma membrane	72.89	72.38
TraesCS6A01G405600.1	Wheat	plasma membrane	69.72	67.81
TraesCS6A01G405700.1	Wheat	golgi	69.37	67.47
TraesCS5A01G181000.1	Wheat	plastid	68.66	67.24
TraesCS6A01G245100.1	Wheat	golgi, peroxisome, plasma membrane	67.96	66.55
TraesCS5A01G530600.1	Wheat	golgi, peroxisome, plasma membrane	68.31	66.44
TraesCS5A01G332300.1	Wheat	plasma membrane	67.96	66.32
TraesCS4A01G312700.1	Wheat	plasma membrane	66.9	65.29
TraesCS6A01G082900.1	Wheat	golgi, peroxisome, plasma membrane	63.73	61.36
TraesCS7A01G191200.1	Wheat	golgi, peroxisome, plasma membrane	62.68	58.55
TraesCS4A01G286200.1	Wheat	golgi, peroxisome, plasma membrane	62.32	58.22
TraesCS2A01G407700.2	Wheat	golgi, peroxisome, plasma membrane	50.35	49.48
TraesCS2A01G414100.1	Wheat	plasma membrane	32.39	37.1
TraesCS7A01G331300.1	Wheat	unclear	32.04	36.69
TraesCS6A01G250300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	32.04	36.55
TraesCS3A01G535300.1	Wheat	plasma membrane	32.39	36.51
TraesCS4A01G410800.1	Wheat	golgi, plasma membrane, vacuole	28.87	32.8
TraesCS2A01G374400.1	Wheat	plasma membrane	29.23	31.32
TraesCS3A01G155800.1	Wheat	plasma membrane	26.76	30.65
TraesCS3A01G434600.1	Wheat	endoplasmic reticulum, extracellular, vacuole	25.35	30.38
TraesCS1A01G165400.1	Wheat	golgi, mitochondrion, plasma membrane, plastid	27.82	30.04
TraesCS2A01G414200.1	Wheat	plastid	26.76	29.01
TraesCS5A01G518300.1	Wheat	golgi, plasma membrane, vacuole	25.7	28.52

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF196	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2A01G065700
EnsemblPlants:TraesCS2A01G065700.1	TIGR:cd00333	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:-:29720160..29721523

Molecular Weight (calculated)

29895.6 Da

IEP (calculated)

9.455

GRAVY (calculated)

0.542

Length

284 amino acids

Sequence
(BLAST)

001: MAKEVSEEPE HAAPAHKDYS DPPPAPLFDM GELRMWSFYR ALIAEFVATL LFLYITVATV IGYKVQSAAD PCGGVGVLGI AWAFGGMIFV LVYCTAGISG
101: GHINPAVTFG LLLARKVSLL RAVMYIVAQC AGGIVGAGIV KGIMRDAYQA NGGGANMVAS GFSRGTALGA EIVGTFVLVY TVFSATDPKR SARDSHVPVL
201: APLPIGFAVF MVHLATIPIT GTGINPARSL GAAVIYNKKA AWDNHWIFWV GPFVGALAAA AYHQYILRAA AIKALGSFRS SRSN

Best Arabidopsis Sequence Match ( AT2G16850.1 )
(BLAST)

001: MSKEVSEEGR HGKDYVDPPP APLLDMAELK LWSFYRAIIA EFIATLLFLY VTVATVIGHK NQTGPCGGVG LLGIAWAFGG MIFVLVYCTA GISGGHINPA
101: VTFGLFLARK VSLPRAVAYM VAQCLGAICG VGLVKAFMMT PYKRLGGGAN TVADGYSTGT ALGAEIIGTF VLVYTVFSAT DPKRSARDSH VPVLAPLPIG
201: FAVFMVHLAT IPITGTGINP ARSFGAAVIY NNEKAWDDHW IFWVGPFVGA LAAAAYHQYI LRAAAIKALA SFRSNPTN

Arabidopsis Description

PIP2-8Probable aquaporin PIP2-8 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVX8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.