Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G220300.1 | Wheat | cytosol | 98.25 | 98.25 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 97.81 | 97.81 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 94.74 | 94.74 |
| Zm00001d017390_P001 | Maize | cytosol | 68.42 | 69.33 |
| KXG31128 | Sorghum | cytosol | 68.42 | 69.33 |
| Zm00001d051288_P001 | Maize | cytosol | 66.23 | 67.11 |
| Os02t0643000-01 | Rice | plasma membrane | 74.12 | 65.25 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 63.6 | 58.23 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 60.96 | 58.16 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 58.33 | 55.65 |
| Solyc01g090910.2.1 | Tomato | nucleus | 56.58 | 55.36 |
| Solyc10g018350.1.1 | Tomato | cytosol | 55.7 | 53.36 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 55.7 | 53.14 |
| AT2G23830.1 | Thale cress | cytosol | 34.21 | 52.35 |
| KRH76164 | Soybean | endoplasmic reticulum | 55.26 | 52.28 |
| KRH65384 | Soybean | cytosol | 54.82 | 51.87 |
| Bra003313.1-P | Field mustard | cytosol | 50.0 | 51.12 |
| CDY41153 | Canola | cytosol | 53.07 | 50.84 |
| CDX71796 | Canola | cytosol | 53.07 | 50.84 |
| AT2G45140.1 | Thale cress | cytosol | 53.07 | 50.63 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 53.07 | 50.63 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 53.51 | 50.62 |
| GSMUA_Achr11P... | Banana | cytosol | 44.3 | 50.5 |
| TraesCS7B01G201800.1 | Wheat | cytosol, golgi, plasma membrane | 52.63 | 50.42 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 52.63 | 50.21 |
| CDY48365 | Canola | cytosol | 52.63 | 50.21 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 52.63 | 50.0 |
| Bra007547.1-P | Field mustard | cytosol | 52.19 | 50.0 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 52.63 | 50.0 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 52.19 | 49.79 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 52.19 | 49.79 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 49.56 | 49.78 |
| CDY57247 | Canola | cytosol | 52.19 | 49.58 |
| CDY56247 | Canola | cytosol | 52.19 | 49.58 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 52.19 | 49.38 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 51.75 | 49.37 |
| Solyc06g034220.2.1 | Tomato | nucleus | 47.37 | 47.58 |
| PGSC0003DMT400066920 | Potato | cytosol | 54.39 | 46.44 |
| AT3G60600.1 | Thale cress | cytosol | 51.75 | 46.09 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 56.14 | 45.71 |
| TraesCS6B01G277000.1 | Wheat | cytosol | 42.54 | 41.45 |
| TraesCS1B01G204400.1 | Wheat | cytosol | 48.68 | 40.51 |
| Zm00001d036342_P001 | Maize | cytosol | 44.3 | 40.4 |
| PGSC0003DMT400076826 | Potato | cytosol | 10.53 | 40.0 |
| Bra035442.1-P | Field mustard | cytosol | 17.98 | 37.96 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 16.67 | 37.25 |
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 37.28 | 36.64 |
| TraesCS2B01G430600.1 | Wheat | cytosol, plastid | 38.6 | 36.36 |
| TraesCS2B01G036500.1 | Wheat | cytosol | 23.25 | 35.57 |
| TraesCS3B01G511900.2 | Wheat | cytosol | 42.98 | 27.0 |
| TraesCS6B01G008300.1 | Wheat | cytosol | 26.75 | 23.37 |
| TraesCS2B01G214400.1 | Wheat | mitochondrion | 21.49 | 18.28 |
| AT1G51270.3 | Thale cress | cytosol | 41.67 | 14.91 |
| TraesCS7B01G459800.1 | Wheat | cytosol | 28.07 | 12.45 |
| TraesCS7B01G460100.2 | Wheat | cytosol | 25.88 | 12.09 |
| TraesCS3B01G103500.2 | Wheat | cytosol | 28.95 | 11.87 |
| TraesCS6B01G001300.1 | Wheat | cytosol, nucleus, plasma membrane | 22.81 | 11.09 |
| TraesCS4B01G372400.1 | Wheat | cytosol | 25.44 | 10.88 |
| TraesCS7B01G002600.1 | Wheat | cytosol | 19.3 | 9.87 |
| TraesCS2B01G100300.1 | Wheat | cytosol | 19.74 | 9.62 |
| TraesCS7B01G461000.2 | Wheat | cytosol | 32.46 | 8.7 |
| TraesCS7B01G462400.1 | Wheat | cytosol | 23.25 | 8.66 |
| TraesCS7B01G460400.1 | Wheat | cytosol | 28.51 | 8.14 |
| TraesCS3B01G611100.1 | Wheat | cytosol | 25.44 | 7.52 |
| TraesCS7B01G463000.1 | Wheat | mitochondrion | 33.33 | 7.49 |
| TraesCS7B01G459900.1 | Wheat | cytosol | 26.32 | 6.95 |
| TraesCS7B01G462600.1 | Wheat | cytosol | 25.88 | 6.84 |
| TraesCS2B01G025500.1 | Wheat | cytosol | 25.0 | 5.86 |
| TraesCS3B01G593500.1 | Wheat | cytosol | 30.7 | 4.92 |
| TraesCS7B01G460600.1 | Wheat | cytosol | 14.47 | 4.8 |
| TraesCS4B01G343200.1 | Wheat | cytosol | 28.51 | 4.61 |
| TraesCS6B01G008400.1 | Wheat | cytosol | 28.07 | 4.18 |
| TraesCS7B01G353800.1 | Wheat | cytosol | 25.44 | 3.38 |
| TraesCS4B01G004000.1 | Wheat | cytosol, peroxisome, plasma membrane | 30.7 | 2.96 |
| TraesCS3B01G574400.1 | Wheat | cytosol | 0.88 | 0.75 |
| TraesCS6B01G013900.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 |
| PANTHER:PTHR10809:SF87 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6B01G266100 | EnsemblPlants:TraesCS6B01G266100.1 |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:478475285..478480077
Molecular Weight (calculated)
25813.1 Da
IEP (calculated)
7.196
GRAVY (calculated)
-0.329
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSESRELLG IDPNELRFAF ELKKQISCSL HLTNRTDQYI AFKVKTTSPK KYCVRPNNGI VAPRSTFDVL VTMQAQREAP PDMQCRDKFL VQSAVVSQDI
101: APKDINGDMF TKESGNVVDE VKLQVIYAPP SKPTSVNEGS DQESLGSWSY QETTRELAEP ETIPSDPLAL ILKLMKEEKN FAVQENNKLR EELRLLRREI
201: SRQNVGFSLL FVLVAAILGV LLGFFMRR
101: APKDINGDMF TKESGNVVDE VKLQVIYAPP SKPTSVNEGS DQESLGSWSY QETTRELAEP ETIPSDPLAL ILKLMKEEKN FAVQENNKLR EELRLLRREI
201: SRQNVGFSLL FVLVAAILGV LLGFFMRR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.