Factsheet for Bra035442.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 4
golgi 2
plasma membrane 3
endoplasmic reticulum 2
vacuole 2
cytosol 2
nucleus 1
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	extracellular, nucleus, peroxisome, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44556	Canola	cytosol, extracellular, plastid	63.89	67.65
AT2G23830.1	Thale cress	cytosol	56.48	40.94
Bra003313.1-P	Field mustard	cytosol	56.48	27.35
Bra003423.1-P	Field mustard	cytosol, golgi, plasma membrane	58.33	26.25
Bra007547.1-P	Field mustard	cytosol	57.41	26.05
Bra014481.1-P	Field mustard	cytosol, golgi, plasma membrane	57.41	25.94
Bra040323.1-P	Field mustard	cytosol, golgi, plasma membrane	56.48	25.52
KRH65384	Soybean	cytosol	52.78	23.65
KRH76164	Soybean	endoplasmic reticulum	52.78	23.65
PGSC0003DMT400076826	Potato	cytosol	12.96	23.33
VIT_15s0048g00220.t01	Wine grape	cytosol, nucleus, plasma membrane	50.93	23.01
Solyc06g034220.2.1	Tomato	nucleus	47.22	22.47
Os08t0156700-01	Rice	plasma membrane	50.0	22.22
Solyc10g018350.1.1	Tomato	cytosol	48.15	21.85
PGSC0003DMT400055602	Potato	cytosol, golgi, plasma membrane	45.37	21.59
Solyc01g090910.2.1	Tomato	nucleus	46.3	21.46
TraesCS7A01G300700.1	Wheat	cytosol	48.15	21.4
TraesCS7D01G296400.1	Wheat	cytosol	48.15	21.4
Zm00001d051288_P001	Maize	cytosol	43.52	20.89
GSMUA_Achr1P20280_001	Banana	cytosol	40.74	20.56
Zm00001d049553_P001	Maize	plasma membrane	46.3	20.49
EES14570	Sorghum	cytosol, nucleus, plasma membrane	46.3	20.49
Zm00001d017390_P001	Maize	cytosol	42.59	20.44
GSMUA_Achr11P...	Banana	cytosol	37.04	20.0
KXG31128	Sorghum	cytosol	41.67	20.0
GSMUA_Achr5P20880_001	Banana	cytosol	43.52	19.67
PGSC0003DMT400066920	Potato	cytosol	47.22	19.1
HORVU2Hr1G091830.4	Barley	cytosol	43.52	18.88
TraesCS2B01G385700.2	Wheat	cytosol	43.52	18.88
TraesCS2A01G368500.1	Wheat	cytosol	43.52	18.88
GSMUA_Achr11P...	Banana	cytosol, nucleus, plasma membrane	41.67	18.83
Os04t0534400-01	Rice	cytosol	43.52	18.8
TraesCS2D01G365300.2	Wheat	cytosol	42.59	18.47
Bra000978.1-P	Field mustard	cytosol	39.81	18.22
TraesCS6D01G220300.1	Wheat	cytosol	37.96	17.98
TraesCS6B01G266100.1	Wheat	cytosol, golgi, plasma membrane	37.96	17.98
TraesCS6A01G237600.1	Wheat	cytosol, golgi, plasma membrane	37.96	17.98
Os02t0643000-01	Rice	plasma membrane	42.59	17.76
HORVU7Hr1G071270.2	Barley	mitochondrion	48.15	17.63
HORVU6Hr1G060760.3	Barley	cytosol, golgi, plasma membrane	37.04	17.54
GSMUA_Achr8P11120_001	Banana	cytosol	45.37	17.5
EES12559	Sorghum	cytosol	39.81	17.27
Zm00001d036342_P001	Maize	cytosol	39.81	17.2
Bra022110.1-P	Field mustard	cytosol	33.33	16.51
Bra017499.1-P	Field mustard	cytosol	33.33	16.36
Bra024958.1-P	Field mustard	cytosol	32.41	16.05
Bra022111.1-P	Field mustard	cytosol	32.41	15.91
Zm00001d025939_P003	Maize	cytosol, golgi, plasma membrane	38.89	14.09
Bra031641.1-P	Field mustard	cytosol	40.74	12.83
Bra018597.1-P	Field mustard	cytosol	39.81	11.59
Bra030744.1-P	Field mustard	cytosol	39.81	10.94

Protein Annotations

Gene3D:2.60.40.10	MapMan:35.1	EnsemblPlantsGene:Bra035442	EnsemblPlants:Bra035442.1	EnsemblPlants:Bra035442.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0016020
InterPro:IPR000535	InterPro:IPR013783	InterPro:Ig-like_fold	UniProt:M4F2Z2	InterPro:MSP_dom	PFAM:PF00635
PANTHER:PTHR10809	PANTHER:PTHR10809:SF94	InterPro:PapD-like_sf	SUPFAM:SSF49354	UniParc:UPI00025448D4	InterPro:VAP

Description

AT3G60600 (E=5e-017) VAP27-1 | VAP (VESICLE ASSOCIATED PROTEIN); protein binding

Coordinates

chrA01:-:16215852..16216688

Molecular Weight (calculated)

12173.8 Da

IEP (calculated)

8.853

GRAVY (calculated)

-0.159

Length

108 amino acids

Sequence
(BLAST)

001: MTNKELLTIV PMTLQFPFEL EKPISCYFYL KNQMDNNVAF KLNNPGNYSV RHTSGVVLPR SISKVHATPG VTANEVTHEM FSAEVGKQVE QSVLRVTYTG
101: TRKSCICF

Best Arabidopsis Sequence Match ( AT3G60600.2 )
(BLAST)

001: MSNIDLIGMS NRDLIGMSNS ELLTVEPLDL QFPFELKKQI SCSLYLTNKT DNNVAFKVKT TNPKKYCVRP NTGVVLPRST CEVLVTMQAQ KEAPSDMQCK
101: DKFLLQGVIA SPGVTAKEVT PEMFSKEAGH RVEETKLRVT YVAPPRPPSP VHEGSEEGSS PRASVSDNGH GSEFSFERFI VDNKAGHQEN TSEVFFTILP
201: SLSPSKPCDI IFCFCSV

Arabidopsis Description

PVA11Vesicle-associated protein 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.