Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12559 | Sorghum | cytosol | 82.8 | 83.13 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 82.4 | 82.73 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 82.0 | 82.33 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 82.0 | 82.33 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 81.6 | 81.93 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 80.0 | 67.11 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 64.0 | 66.95 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 64.0 | 66.95 |
| Solyc01g090910.2.1 | Tomato | nucleus | 60.4 | 64.81 |
| Solyc10g018350.1.1 | Tomato | cytosol | 60.0 | 63.03 |
| Bra003313.1-P | Field mustard | cytosol | 56.0 | 62.78 |
| Os08t0156700-01 | Rice | plasma membrane | 60.4 | 62.14 |
| AT2G45140.1 | Thale cress | cytosol | 59.2 | 61.92 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 58.4 | 61.09 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 58.4 | 61.09 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 58.0 | 60.67 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 58.0 | 60.67 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 57.6 | 59.75 |
| KRH76164 | Soybean | endoplasmic reticulum | 57.6 | 59.75 |
| KRH65384 | Soybean | cytosol | 57.6 | 59.75 |
| CDY56247 | Canola | cytosol | 57.2 | 59.58 |
| CDY57247 | Canola | cytosol | 57.2 | 59.58 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 57.2 | 59.34 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 55.6 | 58.16 |
| CDY48365 | Canola | cytosol | 55.6 | 58.16 |
| Os02t0643000-01 | Rice | plasma membrane | 60.0 | 57.92 |
| GSMUA_Achr11P... | Banana | cytosol | 46.0 | 57.5 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 55.2 | 57.5 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 55.2 | 57.5 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 54.8 | 57.32 |
| CDX71796 | Canola | cytosol | 54.4 | 57.14 |
| CDY41153 | Canola | cytosol | 54.4 | 57.14 |
| Bra007547.1-P | Field mustard | cytosol | 53.6 | 56.3 |
| AT3G60600.1 | Thale cress | cytosol | 57.2 | 55.86 |
| AT2G23830.1 | Thale cress | cytosol | 33.2 | 55.7 |
| Os08t0155100-01 | Rice | plasma membrane | 52.4 | 55.27 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 49.2 | 54.19 |
| PGSC0003DMT400066920 | Potato | cytosol | 57.6 | 53.93 |
| Os02t0661900-02 | Rice | cytosol | 22.8 | 53.77 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 58.4 | 52.14 |
| Solyc06g034220.2.1 | Tomato | nucleus | 46.4 | 51.1 |
| Os10t0507600-01 | Rice | cytosol, plasma membrane | 42.4 | 44.17 |
| Bra035442.1-P | Field mustard | cytosol | 18.8 | 43.52 |
| PGSC0003DMT400076826 | Potato | cytosol | 10.4 | 43.33 |
| Os04t0554200-02 | Rice | cytosol, nucleus, plastid | 41.2 | 42.21 |
| Os04t0369000-01 | Rice | cytosol, plasma membrane | 20.8 | 37.96 |
| Os10t0549100-01 | Rice | plasma membrane | 34.4 | 36.91 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 14.8 | 36.27 |
| Os02t0652550-00 | Rice | cytosol | 34.8 | 32.58 |
| Os01t0936800-01 | Rice | cytosol, plasma membrane | 42.0 | 27.63 |
| Os05t0373000-01 | Rice | cytosol | 41.2 | 21.59 |
| AT1G51270.3 | Thale cress | cytosol | 46.4 | 18.21 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | EntrezGene:4336509 | EMBL:AK071369 | ProteinID:BAF15330.1 | ProteinID:BAS90246.1 |
| ncoils:Coil | ProteinID:EEE61404.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 |
| InterPro:Ig-like_fold | InterPro:MSP_dom | EnsemblPlantsGene:Os04g0534400 | EnsemblPlants:Os04t0534400-01 | PFAM:PF00635 | PIRSF:PIRSF019693 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF49 | InterPro:PapD-like_sf | UniProt:Q0JBF7 | SUPFAM:SSF49354 |
| TMHMM:TMhelix | UniParc:UPI000021CA48 | InterPro:VAP | RefSeq:XP_015636238.1 | SEG:seg | : |
Description
PapD-like domain containing protein. (Os04t0534400-01)
Coordinates
chr4:-:26712651..26715739
Molecular Weight (calculated)
27695.0 Da
IEP (calculated)
5.524
GRAVY (calculated)
-0.504
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSDSKELLG IEPLELRFSF ETKKQISCSM QLTNRTDDYI AFKVKTTSPK KYCVRPNSGI VPPRSTSDVI VTMQAQREAP ADMQCKDKFL VQSVVVTEGT
101: TTKDVTGEMF NKGSGNVVDE RKLKVVYVQP PRPPSPVREG SEEGSSPRAS LSEGGNLNYQ DTTRESDEPP LLSATRAHKD AEDVTSDSET SALISRLTEE
201: RNSAIQQNNK LLEEMDLVRR EISKQNGGFP FVFVVVVALL GILLGYIMKR
101: TTKDVTGEMF NKGSGNVVDE RKLKVVYVQP PRPPSPVREG SEEGSSPRAS LSEGGNLNYQ DTTRESDEPP LLSATRAHKD AEDVTSDSET SALISRLTEE
201: RNSAIQQNNK LLEEMDLVRR EISKQNGGFP FVFVVVVALL GILLGYIMKR
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.