Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- golgi 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G45140.1 | CDY10468 | AT5G02100.1 | 19207211 |
| AT2G45140.1 | CDY40331 | AT5G02100.1 | 19207211 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 96.68 | 96.68 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 92.95 | 93.72 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 92.53 | 93.31 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 92.12 | 92.89 |
| AT2G45140.1 | Thale cress | cytosol | 89.63 | 90.38 |
| CDY56247 | Canola | cytosol | 88.38 | 88.75 |
| CDY57247 | Canola | cytosol | 87.97 | 88.33 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 79.67 | 80.33 |
| CDX71796 | Canola | cytosol | 78.84 | 79.83 |
| CDY48365 | Canola | cytosol | 78.84 | 79.5 |
| CDY41153 | Canola | cytosol | 78.42 | 79.41 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 78.42 | 78.75 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 71.78 | 72.38 |
| KRH65384 | Soybean | cytosol | 70.95 | 70.95 |
| KRH76164 | Soybean | endoplasmic reticulum | 70.54 | 70.54 |
| Solyc01g090910.2.1 | Tomato | nucleus | 65.98 | 68.24 |
| Solyc10g018350.1.1 | Tomato | cytosol | 66.81 | 67.65 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 59.75 | 60.25 |
| Zm00001d049553_P001 | Maize | plasma membrane | 59.75 | 59.02 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 58.09 | 57.61 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 58.09 | 57.61 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 58.09 | 57.38 |
| Os08t0156700-01 | Rice | plasma membrane | 57.68 | 57.2 |
| Os04t0534400-01 | Rice | cytosol | 59.34 | 57.2 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 56.43 | 56.9 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 53.11 | 56.39 |
| CDX91914 | Canola | cytosol | 55.19 | 56.36 |
| CDX74330 | Canola | cytosol | 54.77 | 55.93 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 57.68 | 55.82 |
| PGSC0003DMT400066920 | Potato | cytosol | 61.41 | 55.43 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 57.26 | 55.42 |
| EES12559 | Sorghum | cytosol | 56.85 | 55.02 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 56.85 | 55.02 |
| Solyc06g034220.2.1 | Tomato | nucleus | 51.45 | 54.63 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 56.43 | 54.62 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 48.13 | 54.21 |
| Zm00001d017390_P001 | Maize | cytosol | 49.79 | 53.33 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 50.21 | 53.07 |
| KXG31128 | Sorghum | cytosol | 49.38 | 52.89 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 49.79 | 52.63 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 49.79 | 52.63 |
| Zm00001d051288_P001 | Maize | cytosol | 48.96 | 52.44 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 49.38 | 52.19 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 59.34 | 51.07 |
| PGSC0003DMT400076826 | Potato | cytosol | 12.45 | 50.0 |
| GSMUA_Achr11P... | Banana | cytosol | 40.25 | 48.5 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 58.09 | 47.46 |
| Os02t0643000-01 | Rice | plasma membrane | 49.38 | 45.95 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 56.02 | 45.3 |
| CDY28969 | Canola | cytosol | 40.25 | 44.5 |
| CDY33519 | Canola | cytosol | 40.25 | 44.5 |
| CDY40565 | Canola | cytosol | 40.25 | 44.5 |
| CDX77746 | Canola | cytosol | 40.25 | 44.5 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 18.67 | 44.12 |
| CDY25982 | Canola | cytosol | 40.25 | 44.09 |
| CDY43438 | Canola | cytosol | 39.83 | 43.64 |
| Zm00001d036342_P001 | Maize | cytosol | 38.17 | 36.8 |
| CDY06330 | Canola | cytosol | 41.91 | 29.45 |
| CDX93534 | Canola | cytosol | 41.91 | 27.22 |
| CDX95029 | Canola | cytosol | 41.08 | 26.47 |
| CDY32136 | Canola | cytosol | 39.0 | 24.74 |
| CDY31124 | Canola | cytosol | 39.0 | 24.67 |
| CDY22664 | Canola | plasma membrane | 41.91 | 23.82 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:A0A078E2V8 | EnsemblPlants:CDX95631 | ProteinID:CDX95631 | ProteinID:CDX95631.1 |
| ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0016020 | EnsemblPlantsGene:GSBRNA2T00101511001 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold |
| InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 |
| InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0004EEAC0D | InterPro:VAP | SEG:seg |
Description
BnaC03g25120D
Coordinates
chrLK031890:+:352170..354342
Molecular Weight (calculated)
26668.9 Da
IEP (calculated)
8.880
GRAVY (calculated)
-0.446
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNALLDIDP IDLQFPFELR KQISCSLYLA NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVATPGVTPK
101: DVTPEMFSKE AGHRVEETKL RVVYVDPPRP PSPVHEGSEE GSSPRASVSD NGNNASDFTA APRFSVDRLK PQDNPSEARA LITRLTEEKN SAVQLNNRLQ
201: QELEQLKRGS NRSQSGGGIP FLYVLLVGLI GLILGYIMKR T
101: DVTPEMFSKE AGHRVEETKL RVVYVDPPRP PSPVHEGSEE GSSPRASVSD NGNNASDFTA APRFSVDRLK PQDNPSEARA LITRLTEEKN SAVQLNNRLQ
201: QELEQLKRGS NRSQSGGGIP FLYVLLVGLI GLILGYIMKR T
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.