Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77746 | Canola | cytosol | 99.54 | 99.54 |
| Bra024958.1-P | Field mustard | cytosol | 98.17 | 98.17 |
| CDY28969 | Canola | cytosol | 96.33 | 96.33 |
| CDY40565 | Canola | cytosol | 96.33 | 96.33 |
| AT5G47180.1 | Thale cress | cytosol | 93.12 | 92.27 |
| CDY43438 | Canola | cytosol | 91.74 | 90.91 |
| CDY25982 | Canola | cytosol | 91.28 | 90.45 |
| KRH28185 | Soybean | cytosol, golgi, nucleus | 63.76 | 63.47 |
| PGSC0003DMT400067515 | Potato | nucleus | 62.84 | 62.27 |
| Solyc08g007200.2.1 | Tomato | unclear | 61.01 | 61.86 |
| Solyc08g078000.2.1 | Tomato | nucleus | 62.39 | 61.82 |
| KRH57501 | Soybean | plasma membrane | 59.63 | 61.61 |
| PGSC0003DMT400052797 | Potato | cytosol | 60.55 | 61.4 |
| KRH04206 | Soybean | cytosol | 62.39 | 61.26 |
| GSMUA_Achr11P... | Banana | cytosol | 57.34 | 54.35 |
| KRH77304 | Soybean | plasma membrane, vacuole | 61.47 | 53.82 |
| GSMUA_Achr5P18320_001 | Banana | cytosol, nucleus, plasma membrane | 55.5 | 51.93 |
| TraesCS6B01G282300.1 | Wheat | cytosol, golgi, plasma membrane | 53.67 | 50.43 |
| TraesCS6D01G224100.1 | Wheat | cytosol, golgi, plasma membrane | 53.67 | 50.43 |
| TraesCS6A01G242200.1 | Wheat | cytosol, golgi, plasma membrane | 53.67 | 50.43 |
| Os10t0549100-01 | Rice | plasma membrane | 53.67 | 50.21 |
| Os02t0652550-00 | Rice | cytosol | 54.59 | 44.57 |
| CDX91914 | Canola | cytosol | 46.33 | 42.8 |
| CDX74330 | Canola | cytosol | 45.87 | 42.37 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 45.41 | 41.08 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 44.95 | 41.0 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 44.95 | 41.0 |
| HORVU6Hr1G062050.9 | Barley | mitochondrion | 54.59 | 40.89 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 44.5 | 40.25 |
| CDY56247 | Canola | cytosol | 43.58 | 39.58 |
| CDY57247 | Canola | cytosol | 43.58 | 39.58 |
| CDY41153 | Canola | cytosol | 42.66 | 39.08 |
| CDY48365 | Canola | cytosol | 42.66 | 38.91 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 42.66 | 38.91 |
| CDX71796 | Canola | cytosol | 42.2 | 38.66 |
| Zm00001d051329_P002 | Maize | mitochondrion, plasma membrane, plastid | 53.21 | 38.41 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 41.74 | 37.92 |
| Zm00001d017448_P001 | Maize | endoplasmic reticulum, golgi, plastid | 53.21 | 37.42 |
| Zm00001d014260_P001 | Maize | plastid | 30.28 | 37.08 |
| EES05798 | Sorghum | plastid | 53.67 | 36.11 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 14.68 | 31.37 |
| VIT_00s0287g00080.t01 | Wine grape | extracellular | 43.12 | 27.01 |
| TraesCS2B01G214400.1 | Wheat | mitochondrion | 32.11 | 26.12 |
| CDY06330 | Canola | cytosol | 36.7 | 23.32 |
| CDX93534 | Canola | cytosol | 37.61 | 22.1 |
| CDX95029 | Canola | cytosol | 37.61 | 21.93 |
| CDY31124 | Canola | cytosol | 37.61 | 21.52 |
| CDY32136 | Canola | cytosol | 37.16 | 21.32 |
| CDY22664 | Canola | plasma membrane | 36.7 | 18.87 |
Protein Annotations
| Gene3D:2.60.40.10 | MapMan:20.7.1 | GO:A0A078H7S7 | UniProt:A0A078H7S7 | EnsemblPlants:CDY33519 | ProteinID:CDY33519 |
| ProteinID:CDY33519.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005783 | GO:GO:0005789 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:GSBRNA2T00054771001 | InterPro:IPR000535 |
| InterPro:IPR013783 | InterPro:Ig-like_fold | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 | PFscan:PS50202 |
| PANTHER:PTHR10809 | PANTHER:PTHR10809:SF42 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix | UniParc:UPI0004EE069F |
| InterPro:VAP | SEG:seg | : | : | : | : |
Description
BnaA06g35540DBnaA06g35540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7S7]
Coordinates
chrLK032315:-:414531..416885
Molecular Weight (calculated)
24219.1 Da
IEP (calculated)
8.303
GRAVY (calculated)
-0.398
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGVGENQLI SIVPDELKFL FELEKQSYCD LKVANKTEDY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTLVPPH
101: TDVDDLPQDT FTKDSGKTLT ECKLKVSYIS SSTTQRSSES GGTNGDGNGS ETISTIQRLK EERDAAVKQT QQLQHELEMV KKRRMNSGNG LSLKLAALVG
201: LIGLIIGFIL KLTLASPT
101: TDVDDLPQDT FTKDSGKTLT ECKLKVSYIS SSTTQRSSES GGTNGDGNGS ETISTIQRLK EERDAAVKQT QQLQHELEMV KKRRMNSGNG LSLKLAALVG
201: LIGLIIGFIL KLTLASPT
001: MTGVGENQLI SIQPDELKFL FELEKQSYCD LKVANKTENY VAFKVKTTSP KKYFVRPNTG VIQPWDSCII RVTLQAQREY PPDMQCKDKF LLQSTIVPPH
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
101: TDVDELPQDT FTKDSGKTLT ECKLKVSYIT PSTTQRSSES GATNGDGQSS ETISTIQRLK EERDAAVKQT QQLQHELETV RRRRNQRNSG NGLSLKLAAM
201: VGLIGLIIGF ILKLTLASPT
Arabidopsis Description
PVA21Vesicle-associated protein 2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVU1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.